Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 9.7e-68 260.0 130 100.0
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 2.2e-64 248.8 130 95.4
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 1.1e-39 166.8 141 64.5
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 1.2e-33 146.7 146 57.5
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 2.1e-33 146.0 130 57.7
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 5.1e-32 141.4 127 56.7
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 8.6e-32 140.6 137 51.8
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 8.6e-32 140.6 137 51.8
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 8.6e-32 140.6 137 51.8
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.1e-31 140.2 130 54.6
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.1e-31 140.2 127 55.1
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 1.5e-31 139.8 131 53.4
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 1.9e-31 139.4 128 56.2
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 2.5e-31 139.0 131 52.7
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 7.3e-31 137.5 128 55.5
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 1.2e-30 136.7 144 55.6
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.1e-30 136.0 135 53.3
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 6.2e-30 134.4 134 57.5
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 1.1e-29 133.7 121 58.7
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.4e-29 133.3 127 53.5
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 2.3e-29 132.5 112 58.9
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 2.3e-29 132.5 135 52.6
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 3.1e-29 132.1 135 54.8
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 5.2e-29 131.3 123 55.3
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 5.2e-29 131.3 129 53.5
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 8.9e-29 130.6 136 51.5
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 2.0e-28 129.4 127 49.6
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 3.4e-28 128.6 141 50.4
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 3.4e-28 128.6 141 50.4
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 5.8e-28 127.9 116 53.4
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 9.9e-28 127.1 120 55.8
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 9.9e-28 127.1 127 51.2
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 2.9e-27 125.6 130 52.3
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 3.7e-27 125.2 135 51.9
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 3.7e-27 125.2 112 56.2
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 4.9e-27 124.8 113 54.9
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 6.4e-27 124.4 138 47.8
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 6.4e-27 124.4 129 52.7
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 8.3e-27 124.0 123 53.7
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 1.4e-26 123.2 138 50.7
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.9e-26 122.9 131 47.3
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 1.9e-26 122.9 123 52.8
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 3.2e-26 122.1 128 49.2
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 4.1e-26 121.7 123 51.2
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 4.1e-26 121.7 144 50.7
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 9.2e-26 120.6 134 50.7
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 2.1e-25 119.4 115 52.2
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 6.0e-25 117.9 142 50.0
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 6.0e-25 117.9 130 50.0
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 2.3e-24 115.9 133 50.4
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 3.0e-24 115.5 128 53.9
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 3.9e-24 115.2 127 46.5
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 5.1e-24 114.8 117 48.7
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 1.1e-23 113.6 127 48.0
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 1.1e-23 113.6 117 48.7
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 1.1e-23 113.6 117 48.7
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 1.5e-23 113.2 131 45.8
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 1.9e-23 112.8 138 49.3
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 2.5e-23 112.5 92 59.8
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 4.3e-23 111.7 106 52.8
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 5.6e-23 111.3 124 49.2
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 7.3e-23 110.9 151 43.0
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 9.5e-23 110.5 112 52.7
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 9.5e-23 110.5 151 43.0
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 1.2e-22 110.2 136 45.6
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 1.6e-22 109.8 139 49.6
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 2.1e-22 109.4 117 47.9
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 3.6e-22 108.6 154 44.2
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 4.7e-22 108.2 79 62.0
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 4.7e-22 108.2 118 50.8
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 6.2e-22 107.8 131 47.3
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 8.1e-22 107.5 139 46.0
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 1.8e-21 106.3 120 47.5
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.0e-20 102.8 124 47.6
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 3.4e-20 102.1 74 62.2
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 4.4e-20 101.7 114 44.7
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 4.4e-20 101.7 134 47.8
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 7.6e-20 100.9 135 45.2
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 9.9e-20 100.5 129 44.2
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.7e-19 99.8 113 46.0
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 2.2e-19 99.4 139 43.9
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 2.2e-19 99.4 129 43.4
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 2.9e-19 99.0 134 44.0
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 3.8e-19 98.6 120 48.3
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 6.4e-19 97.8 117 42.7
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 6.4e-19 97.8 129 45.7
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 8.4e-19 97.4 126 40.5
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 1.1e-18 97.1 113 44.2
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 1.1e-18 97.1 129 44.2
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.4e-18 96.7 102 48.0
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 7.1e-18 94.4 139 43.2
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 9.2e-18 94.0 130 42.3
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 9.2e-18 94.0 113 41.6
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.2e-17 93.6 130 42.3
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 2.1e-17 92.8 128 45.3
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 2.7e-17 92.4 122 45.1
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 2.7e-17 92.4 129 43.4
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 3.5e-17 92.0 116 45.7
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 4.6e-17 91.7 134 41.8
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 1.0e-16 90.5 122 44.3
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.0e-16 90.5 125 43.2
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 1.0e-16 90.5 125 40.8
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 1.3e-16 90.1 122 43.4
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 2.3e-16 89.4 75 56.0
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 2.3e-16 89.4 79 45.6
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 2.3e-16 89.4 99 49.5
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 3.0e-16 89.0 113 44.2
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 6.6e-16 87.8 124 41.9
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 6.6e-16 87.8 124 41.9
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 6.6e-16 87.8 96 49.0
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 4.3e-15 85.1 56 66.1
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 4.3e-15 85.1 131 41.2
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 6.2e-14 81.3 114 42.1
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 2.4e-13 79.3 107 40.2
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 3.1e-13 79.0 132 38.6
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 4.0e-13 78.6 90 47.8
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.5e-12 76.6 94 43.6
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 2.1e-09 66.2 103 35.9
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 1.0e-08 63.9 120 36.7
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.0e-08 63.9 122 36.1
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.3e-08 63.5 106 36.8
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 2.3e-08 62.8 127 33.9
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 2.3e-08 62.8 52 50.0
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.3e-08 62.8 109 41.3
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 3.9e-08 62.0 112 38.4
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 8.7e-08 60.8 44 61.4
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 3.3e-07 58.9 44 61.4
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 5.6e-07 58.2 121 35.5
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.8e-06 55.8 113 30.1
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 8.1e-06 54.3 127 32.3


User provided reference genes

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