Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0526731 Helianthus annuus HOM05D003834 ORTHO05D004483 3.7e-67 258.1 129 100.0
HanXRQChr04g0126521 Helianthus annuus HOM05D003834 ORTHO05D004483 4.8e-51 204.5 104 96.2
HanXRQChr11g0326201 Helianthus annuus HOM05D003834 ORTHO05D004483 6.3e-51 204.1 105 96.2
ECA236G2833 Erigeron canadensis HOM05D003834 ORTHO05D004483 6.5e-48 194.1 104 88.5
Lsat_1_v5_gn_7_95440 Lactuca sativa HOM05D003834 ORTHO05D004483 5.5e-47 191.0 104 87.5
arahy.Tifrunner.gnm1.ann1.08QZGW Arachis hypogaea HOM05D003834 ORTHO05D004483 4.0e-45 184.9 104 82.7
arahy.Tifrunner.gnm1.ann1.C43X3W Arachis hypogaea HOM05D003834 ORTHO05D004483 4.0e-45 184.9 104 82.7
CSS0039625 Camellia sinensis var. sinensis HOM05D003834 ORTHO05D004483 5.2e-45 184.5 104 82.7
Cc05_g14750 Coffea canephora HOM05D003834 ORTHO05D004483 8.8e-45 183.7 103 82.5
Nitab4.5_0000461g0120 Nicotiana tabacum HOM05D003834 ORTHO05D004483 8.8e-45 183.7 104 81.7
Nitab4.5_0003612g0010 Nicotiana tabacum HOM05D003834 ORTHO05D004483 8.8e-45 183.7 104 81.7
Peaxi162Scf00285g00817 Petunia axillaris HOM05D003834 ORTHO05D004483 8.8e-45 183.7 104 81.7
PGSC0003DMG400022184 Solanum tuberosum HOM05D003834 ORTHO05D004483 8.8e-45 183.7 104 81.7
Glyma.02G298200 Glycine max HOM05D003834 ORTHO05D004483 1.2e-44 183.3 104 80.8
Glyma.14G015600 Glycine max HOM05D003834 ORTHO05D004483 1.2e-44 183.3 104 80.8
LjContig00272g0006391 Lotus japonicus HOM05D003834 ORTHO05D004483 1.2e-44 183.3 104 80.8
TAR629G2412 Trochodendron aralioides HOM05D003834 ORTHO05D004483 1.2e-44 183.3 104 81.7
VMungo0647G1153 Vigna mungo HOM05D003834 ORTHO05D004483 1.2e-44 183.3 104 80.8
Actinidia05029 Actinidia chinensis HOM05D003834 ORTHO05D004483 1.5e-44 183.0 104 80.8
CAN.G337.23 Capsicum annuum HOM05D003834 ORTHO05D004483 1.5e-44 183.0 104 80.8
Cfa020225 Carpinus fangiana HOM05D003834 ORTHO05D004483 1.5e-44 183.0 104 81.7
CiPaw.12G136300 Carya illinoinensis HOM05D003834 ORTHO05D004483 2.0e-44 182.6 104 81.7
GSVIVG01037786001 Vitis vinifera HOM05D003834 ORTHO05D004483 2.0e-44 182.6 104 81.7
Ca_06377_v3 Cicer arietinum L. HOM05D003834 ORTHO05D004483 2.6e-44 182.2 104 80.8
Lj1A793T50 Lonicera japonica HOM05D003834 ORTHO05D004483 2.6e-44 182.2 104 78.8
Haze_09794 Corylus avellana HOM05D003834 ORTHO05D004483 3.3e-44 181.8 104 81.7
ECA236G2134 Erigeron canadensis HOM05D003834 ORTHO05D004483 3.3e-44 181.8 104 83.7
Gohir.A01G087800 Gossypium hirsutum HOM05D003834 ORTHO05D004483 3.3e-44 181.8 104 80.8
Gohir.D01G073900 Gossypium hirsutum HOM05D003834 ORTHO05D004483 3.3e-44 181.8 104 80.8
Manes.03G138400 Manihot esculenta HOM05D003834 ORTHO05D004483 3.3e-44 181.8 104 80.8
Psat2g008920 Pisum sativum HOM05D003834 ORTHO05D004483 3.3e-44 181.8 104 80.8
Solyc07g065310.3 Solanum lycopersicum HOM05D003834 ORTHO05D004483 3.3e-44 181.8 104 79.8
Sopen07g033510 Solanum pennellii HOM05D003834 ORTHO05D004483 3.3e-44 181.8 104 79.8
Cpa.g.sc12.186 Carica papaya HOM05D003834 ORTHO05D004483 4.4e-44 181.4 104 79.8
THA.LOC104822741 Tarenaya hassleriana HOM05D003834 ORTHO05D004483 4.4e-44 181.4 104 79.8
TPR.G14161 Trifolium pratense HOM05D003834 ORTHO05D004483 4.4e-44 181.4 104 80.8
CARHR087650 Cardamine hirsuta HOM05D003834 ORTHO05D004483 5.7e-44 181.0 104 80.8
Dinv40838 Davidia involucrata HOM05D003834 ORTHO05D004483 5.7e-44 181.0 104 80.8
PGR031G3702 Punica granatum HOM05D003834 ORTHO05D004483 5.7e-44 181.0 104 79.8
AUR62040651 Chenopodium quinoa HOM05D003834 ORTHO05D004483 7.5e-44 180.6 104 78.8
Medtr5g094740 Medicago truncatula HOM05D003834 ORTHO05D004483 7.5e-44 180.6 104 79.8
vmacro11558 Vaccinium macrocarpon HOM05D003834 ORTHO05D004483 7.5e-44 180.6 104 80.8
AT3G13070 Arabidopsis thaliana HOM05D003834 ORTHO05D004483 9.7e-44 180.3 104 79.8
CSS0019206 Camellia sinensis var. sinensis HOM05D003834 ORTHO05D004483 9.7e-44 180.3 104 80.8
ClCG09G021080 Citrullus lanatus HOM05D003834 ORTHO05D004483 9.7e-44 180.3 104 78.8
MELO3C024905.2 Cucumis melo HOM05D003834 ORTHO05D004483 9.7e-44 180.3 104 78.8
Eucgr.F03700 Eucalyptus grandis HOM05D003834 ORTHO05D004483 9.7e-44 180.3 104 79.8
Gohir.A11G277200 Gossypium hirsutum HOM05D003834 ORTHO05D004483 9.7e-44 180.3 104 78.8
QL08p005445 Quercus lobata HOM05D003834 ORTHO05D004483 9.7e-44 180.3 104 81.7
Sed0024668 Sechium edule HOM05D003834 ORTHO05D004483 9.7e-44 180.3 104 78.8
Sc16g0007940 Simmondsia chinensis HOM05D003834 ORTHO05D004483 9.7e-44 180.3 104 78.8
TWI39G0575 Tripterygium wilfordii HOM05D003834 ORTHO05D004483 9.7e-44 180.3 104 79.8
Ah.04g166460 Amaranthus hybridus HOM05D003834 ORTHO05D004483 1.3e-43 179.9 104 78.8
HanXRQChr11g0333951 Helianthus annuus HOM05D003834 ORTHO05D004483 1.3e-43 179.9 104 81.7
Thecc.07G019500 Theobroma cacao HOM05D003834 ORTHO05D004483 1.3e-43 179.9 104 79.8
Aa31LG8G300 Aethionema arabicum HOM05D003834 ORTHO05D004483 1.7e-43 179.5 104 78.8
BcaB06g25489 Brassica carinata HOM05D003834 ORTHO05D004483 1.7e-43 179.5 104 79.8
BcaC01g04008 Brassica carinata HOM05D003834 ORTHO05D004483 1.7e-43 179.5 104 79.8
BcaNung05266 Brassica carinata HOM05D003834 ORTHO05D004483 1.7e-43 179.5 104 79.8
A03p38030 Brassica napus HOM05D000121 ORTHO05D004483 1.7e-43 179.5 104 79.8
A05p36450 Brassica napus HOM05D003834 ORTHO05D004483 1.7e-43 179.5 104 79.8
C03p46120 Brassica napus HOM05D003834 ORTHO05D004483 1.7e-43 179.5 104 79.8
BolC3t16884H Brassica oleracea HOM05D003834 ORTHO05D004483 1.7e-43 179.5 104 79.8
BraA03t12955Z Brassica rapa HOM05D003834 ORTHO05D004483 1.7e-43 179.5 104 79.8
BraA05t22447Z Brassica rapa HOM05D003834 ORTHO05D004483 1.7e-43 179.5 104 79.8
Carub.0003s1241 Capsella rubella HOM05D003834 ORTHO05D004483 1.7e-43 179.5 104 79.8
Nn1g03233 Nelumbo nucifera HOM05D003834 ORTHO05D004483 1.7e-43 179.5 104 77.9
Phvul.008G276000 Phaseolus vulgaris HOM05D003834 ORTHO05D004483 1.7e-43 179.5 104 79.8
BcaC05g29213 Brassica carinata HOM05D003834 ORTHO05D004483 2.2e-43 179.1 104 78.8
C05p54850 Brassica napus HOM05D003834 ORTHO05D004483 2.2e-43 179.1 104 78.8
BolC5t34156H Brassica oleracea HOM05D003834 ORTHO05D004483 2.2e-43 179.1 104 78.8
CANSAT11G2090 Cannabis sativa HOM05D003834 ORTHO05D004483 2.2e-43 179.1 104 79.8
AUR62017064 Chenopodium quinoa HOM05D003834 ORTHO05D004483 2.2e-43 179.1 104 77.9
COL.COLO4_09798 Corchorus olitorius HOM05D003834 ORTHO05D004483 2.2e-43 179.1 104 78.8
CsaV3_7G018550 Cucumis sativus L. HOM05D003834 ORTHO05D004483 2.2e-43 179.1 104 77.9
Duzib170G1101 Durio zibethinus HOM05D003834 ORTHO05D004483 2.2e-43 179.1 104 79.8
Lalb_Chr17g0348801 Lupinus albus HOM05D003834 ORTHO05D004483 2.2e-43 179.1 104 79.8
MD11G1204000 Malus domestica HOM05D003834 ORTHO05D004483 2.2e-43 179.1 104 80.8
Prupe.4G235000 Prunus persica HOM05D003834 ORTHO05D004483 2.2e-43 179.1 104 80.8
TAR627G0963 Trochodendron aralioides HOM05D003834 ORTHO05D004483 2.2e-43 179.1 104 80.8
AL3G24810 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 2.8e-43 178.7 104 78.8
Thhalv10020238m.g Eutrema salsugineum HOM05D003834 ORTHO05D004483 2.8e-43 178.7 104 79.8
Hma1.2p1_0036F.1_g022680 Hydrangea macrophylla HOM05D003834 ORTHO05D004483 3.7e-43 178.3 104 78.8
Lsat_1_v5_gn_7_113161 Lactuca sativa HOM05D003834 ORTHO05D004483 3.7e-43 178.3 104 81.7
MD03G1188400 Malus domestica HOM05D003834 ORTHO05D004483 3.7e-43 178.3 104 80.8
Gohir.D11G287600 Gossypium hirsutum HOM05D003834 ORTHO05D004483 4.8e-43 177.9 104 77.9
Gorai.007G310900 Gossypium raimondii HOM05D003834 ORTHO05D004483 4.8e-43 177.9 104 77.9
Sed0001420 Sechium edule HOM05D003834 ORTHO05D004483 4.8e-43 177.9 104 77.9
SGA_v2.0_scaffold171G38885 Striga asiatica HOM05D003834 ORTHO05D004483 4.8e-43 177.9 104 77.9
TWI38G0150 Tripterygium wilfordii HOM05D003834 ORTHO05D004483 4.8e-43 177.9 104 79.8
EL10Ac4g07610 Beta vulgaris HOM05D003834 ORTHO05D004483 6.3e-43 177.6 104 77.9
Ciclev10007688m.g Citrus clementina HOM05D003834 ORTHO05D004483 6.3e-43 177.6 104 77.9
FvH4_3g24130 Fragaria vesca HOM05D003834 ORTHO05D004483 6.3e-43 177.6 104 78.8
FAN11G3562 Fragaria x ananassa HOM05D003834 ORTHO05D004483 6.3e-43 177.6 104 78.8
FAN16G1958 Fragaria x ananassa HOM05D003834 ORTHO05D004483 6.3e-43 177.6 104 78.8
FAN21G0517 Fragaria x ananassa HOM05D003834 ORTHO05D004483 6.3e-43 177.6 104 78.8
FAN25G0041 Fragaria x ananassa HOM05D003834 ORTHO05D004483 6.3e-43 177.6 104 78.8
FAN25G1232 Fragaria x ananassa HOM05D003834 ORTHO05D004483 6.3e-43 177.6 104 78.8
Sp3g11240 Schrenkiella parvula HOM05D003834 ORTHO05D004483 6.3e-43 177.6 104 78.8
unitig_85.g27343 Utricularia gibba HOM05D003834 ORTHO05D004483 6.3e-43 177.6 104 76.9
PSO675G1367 Papaver somniferum HOM05D003834 ORTHO05D004483 8.2e-43 177.2 104 79.8
Potri.001G362100 Populus trichocarpa HOM05D003834 ORTHO05D004483 8.2e-43 177.2 104 79.8
Atru.chr2.3629 Acer truncatum HOM05D003834 ORTHO05D004483 1.1e-42 176.8 104 78.8
Migut.M01671 Erythranthe guttata HOM05D003834 ORTHO05D004483 1.1e-42 176.8 104 77.9
PSO541G6272 Papaver somniferum HOM05D003834 ORTHO05D004483 1.1e-42 176.8 104 78.8
RcHm_v2.0_Chr5g0042791 Rosa chinensis HOM05D003834 ORTHO05D004483 1.1e-42 176.8 104 78.8
MSTRG.15783 Avicennia marina HOM05D003834 ORTHO05D004483 1.4e-42 176.4 104 78.8
Oeu057086.1 Olea europaea HOM05D003834 ORTHO05D004483 1.4e-42 176.4 104 77.9
PSO302G0051 Papaver somniferum HOM05D003834 ORTHO05D004483 1.4e-42 176.4 104 77.9
arahy.Tifrunner.gnm1.ann1.BBM6FL Arachis hypogaea HOM05D003834 ORTHO05D004483 1.8e-42 176.0 116 74.1
Aqoxy4G02225 Aquilegia oxysepala HOM05D003834 ORTHO05D004483 2.4e-42 175.6 104 76.9
CiPaw.11G201400 Carya illinoinensis HOM05D003834 ORTHO05D004483 2.4e-42 175.6 104 79.8
Dinv05352 Davidia involucrata HOM05D003834 ORTHO05D004483 2.4e-42 175.6 104 76.9
Gorai.002G097000 Gossypium raimondii HOM05D003834 ORTHO05D004483 2.4e-42 175.6 109 77.1
Lalb_Chr04g0247941 Lupinus albus HOM05D003834 ORTHO05D004483 3.1e-42 175.3 104 77.9
MSTRG.6988 Avicennia marina HOM05D003834 ORTHO05D004483 5.3e-42 174.5 104 76.9
SalBow8G1137 Salvia bowleyana HOM05D003834 ORTHO05D004483 1.6e-41 172.9 104 77.9
AT1G55930 Arabidopsis thaliana HOM05D003834 ORTHO05D004483 4.5e-41 171.4 104 76.9
DCAR_012909 Daucus carota HOM05D003834 ORTHO05D004483 4.5e-41 171.4 104 75.0
AL1G64150 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 5.9e-41 171.0 104 76.0
Sabra16G0238600 Salix brachista HOM05D003834 ORTHO05D004483 5.9e-41 171.0 107 77.6
Carub.0001s4454 Capsella rubella HOM05D003834 ORTHO05D004483 7.7e-41 170.6 104 76.9
DCAR_019235 Daucus carota HOM05D003834 ORTHO05D004483 7.7e-41 170.6 104 74.0
Thhalv10011303m.g Eutrema salsugineum HOM05D003834 ORTHO05D004483 2.2e-40 169.1 104 76.0
CDE10G0297 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 2.9e-40 168.7 104 73.1
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 2.9e-40 168.7 104 73.1
MBI16_g26376_MAGBIO Magnolia biondii HOM05D003834 ORTHO05D004483 2.9e-40 168.7 105 77.1
Sp1g41540 Schrenkiella parvula HOM05D003834 ORTHO05D004483 5.0e-40 167.9 104 76.0
Nn1g07452 Nelumbo nucifera HOM05D003834 ORTHO05D004483 8.5e-40 167.2 104 76.9
SGA_v2.0_scaffold168G38536 Striga asiatica HOM05D003834 ORTHO05D004483 1.1e-39 166.8 96 80.2
Gohir.A13G134601 Gossypium hirsutum HOM05D003834 ORTHO05D004483 7.2e-39 164.1 102 73.5
ATR0712G125 Amborella trichopoda HOM05D003834 ORTHO05D004483 1.2e-38 163.3 104 73.1
Os03g0593200 Oryza sativa ssp. japonica HOM05D003834 ORTHO05D004483 4.0e-37 158.3 104 70.2
Pp3c10_7850 Physcomitrium patens HOM05D003834 ORTHO05D004483 1.5e-36 156.4 104 69.2
Zm00001eb049810 Zea mays HOM05D003834 ORTHO05D004483 2.0e-36 156.0 104 69.2
Pp3c2_3830 Physcomitrium patens HOM05D003834 ORTHO05D004483 1.7e-35 152.9 104 68.3
Pp3c1_38160 Physcomitrium patens HOM05D003834 ORTHO05D004483 3.7e-35 151.8 104 67.3
SMO367G1292 Selaginella moellendorffii HOM05D003834 ORTHO05D004483 3.7e-35 151.8 104 66.3
Mapoly0112s0016 Marchantia polymorpha HOM05D003834 ORTHO05D004483 1.4e-34 149.8 108 65.7
SEGI_18466 Sequoiadendron giganteum HOM05D003834 ORTHO05D004483 1.6e-33 146.4 104 66.3
CBR_g22294 Chara braunii HOM05D003834 ORTHO05D004483 2.0e-33 146.0 104 66.3
HPP92_024890 Vanilla planifolia HOM05D003834 ORTHO05D004483 3.5e-33 145.2 104 66.3
SEGI_20343 Sequoiadendron giganteum HOM05D003834 ORTHO05D004483 2.3e-32 142.5 102 63.7
Lj8A176T68 Lonicera japonica HOM05D003834 ORTHO05D004483 3.7e-27 125.2 102 60.8
AagrBONN_evm.TU.Sc2ySwM_344.3938 Anthoceros agrestis HOM05D003834 ORTHO05D004483 1.8e-26 122.9 79 73.4
MCO02G018 Micromonas commoda HOM05D003834 ORTHO05D004483 2.8e-22 109.0 120 46.7
PSO210G2219 Papaver somniferum HOM05D003834 ORTHO05D004483 8.3e-19 97.4 57 73.7
RcHm_v2.0_Chr5g0043101 Rosa chinensis HOM05D003834 ORTHO05D004483 6.6e-16 87.8 48 85.4
RcHm_v2.0_Chr2g0115171 Rosa chinensis HOM05D003834 ORTHO05D004483 8.6e-16 87.4 49 83.7
AL1G64090 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 1.6e-14 83.2 104 47.1
PRCOL_00003811 Prasinoderma coloniale HOM05D003834 ORTHO05D004483 2.2e-11 72.8 84 42.9
MBI12_g23371_MAGBIO Magnolia biondii HOM05D001444 ORTHO05D004695 1.2e-09 67.0 49 55.1
HanXRQChr14g0443231 Helianthus annuus HOM05D003834 ORTHO05D004483 8.6e-08 60.8 48 70.8


User provided reference genes

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