Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 2.7e-157 558.5 267 100.0
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 5.3e-137 491.1 267 84.3
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 1.2e-131 473.4 256 85.5
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 3.2e-113 412.1 260 72.7
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 5.4e-113 411.4 260 72.7
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 7.0e-113 411.0 260 72.7
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 2.7e-112 409.1 265 70.6
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 5.9e-112 407.9 260 71.2
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 1.1e-110 403.7 262 71.0
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 1.5e-110 403.3 266 69.9
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 5.6e-110 401.4 260 71.2
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 5.6e-110 401.4 265 69.1
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 7.3e-110 401.0 267 68.9
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 9.5e-110 400.6 264 70.1
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 9.5e-110 400.6 266 69.5
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 1.8e-108 396.4 259 69.1
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 1.8e-108 396.4 259 69.1
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.2e-107 393.7 246 72.8
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 2.0e-107 392.9 260 68.1
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 5.8e-107 391.3 263 69.6
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 1.3e-106 390.2 261 69.3
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 1.7e-106 389.8 260 70.4
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 1.7e-106 389.8 260 69.2
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 1.7e-106 389.8 259 67.6
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 3.7e-106 388.7 261 67.8
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 6.4e-106 387.9 259 68.0
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 3.2e-105 385.6 249 69.5
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 5.4e-105 384.8 260 70.0
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 1.6e-104 383.3 249 70.3
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 3.5e-104 382.1 249 70.3
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 3.5e-104 382.1 249 70.3
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 6.0e-104 381.3 263 65.4
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 6.0e-104 381.3 253 66.8
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 6.0e-104 381.3 253 66.8
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 7.8e-104 380.9 260 67.3
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 1.3e-103 380.2 249 70.3
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 1.3e-103 380.2 249 70.7
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 3.0e-103 379.0 270 65.9
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 5.0e-103 378.3 256 67.2
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 6.6e-103 377.9 266 67.3
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 6.6e-103 377.9 265 66.0
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 6.6e-103 377.9 260 65.8
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 6.6e-103 377.9 278 64.4
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 6.6e-103 377.9 253 68.8
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 8.6e-103 377.5 256 67.2
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 1.1e-102 377.1 260 66.5
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 1.1e-102 377.1 256 67.6
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 1.1e-102 377.1 249 67.9
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 1.5e-102 376.7 256 66.8
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 1.9e-102 376.3 265 65.3
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 4.3e-102 375.2 256 67.2
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 5.6e-102 374.8 270 65.6
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 7.3e-102 374.4 252 69.4
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 9.5e-102 374.0 258 66.3
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 2.8e-101 372.5 249 68.3
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 3.6e-101 372.1 259 64.9
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 3.6e-101 372.1 285 62.5
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 4.7e-101 371.7 263 65.4
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 6.2e-101 371.3 263 64.6
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 1.4e-100 370.2 263 64.6
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 3.1e-100 369.0 261 64.8
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 1.2e-99 367.1 260 64.6
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 3.4e-99 365.5 264 65.2
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 9.8e-99 364.0 259 64.9
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 9.8e-99 364.0 268 61.9
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 2.2e-98 362.8 222 73.9
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 3.2e-97 359.0 265 62.3
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 4.1e-97 358.6 269 63.2
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 8.1e-93 344.4 266 60.2
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 7.6e-91 337.8 261 61.3
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 2.9e-90 335.9 254 61.4
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 8.4e-90 334.3 236 64.0
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 1.4e-89 333.6 253 58.9
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 7.8e-88 327.8 230 65.2
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 1.9e-86 323.2 239 63.2
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 2.5e-86 322.8 226 65.9
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 2.0e-83 313.2 243 60.9
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 2.9e-82 309.3 279 55.2
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 1.4e-81 307.0 242 59.1
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 1.9e-81 306.6 242 59.5
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 3.5e-80 302.4 236 58.1
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 1.0e-79 300.8 230 60.4
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 3.0e-79 299.3 205 65.9
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 4.8e-77 292.0 194 68.0
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 1.4e-73 280.4 237 53.2
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 3.2e-73 279.3 230 56.5
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 4.2e-73 278.9 176 71.6
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 2.5e-70 269.6 264 53.8
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 2.1e-69 266.5 268 44.0
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 4.8e-69 265.4 268 47.0
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 1.4e-68 263.8 182 65.9
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 1.4e-60 237.3 185 60.0
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 5.8e-59 231.9 155 68.4
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 1.1e-57 227.6 148 68.9
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 2.8e-53 213.0 151 67.5
SEGI_31631 Sequoiadendron giganteum HOM05D006283 ORTHO05D007727 5.5e-49 198.7 164 54.3
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.6e-48 195.7 131 67.2
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.6e-48 195.7 131 67.2
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 1.8e-47 193.7 140 64.3
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.3e-45 187.6 137 64.2
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 5.9e-43 178.7 126 61.9
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 1.0e-42 177.9 130 61.5
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 3.8e-42 176.0 110 70.0
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 4.6e-40 169.1 150 55.3
Cre16.g673841 Chlamydomonas reinhardtii HOM05D006283 ORTHO05D007727 9.4e-33 144.8 236 33.1
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 1.0e-26 124.8 112 53.6
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 3.8e-26 122.9 89 60.7
ClCG07G015660 Citrullus lanatus HOM05D006283 ORTHO05D007727 7.2e-25 118.6 269 34.9
HanXRQChr16g0525261 Helianthus annuus HOM05D006283 ORTHO05D007727 4.7e-24 115.9 68 80.9
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 1.0e-23 114.8 95 57.9
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 2.6e-22 110.2 62 75.8
Psat7g091240 Pisum sativum HOM05D006283 ORTHO05D007727 9.1e-20 101.7 161 41.0
vmacro00625 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 8.0e-16 88.6 44 84.1
Hma1.2p1_0639F.1_g194050 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.5e-14 84.3 43 81.4
Hma1.2p1_0847F.1_g227839 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.5e-14 84.3 43 81.4
PRCOL_00001858 Prasinoderma coloniale HOM05D006283 ORTHO05D007727 4.1e-12 76.3 152 27.6
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 5.5e-09 65.9 41 70.7
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 1.2e-08 64.7 53 54.7
HanXRQChr12g0365531 Helianthus annuus HOM05D006283 ORTHO05D007727 2.1e-08 63.9 83 43.4
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 3.6e-08 63.2 88 40.9
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 6.1e-08 62.4 78 42.3
CSS0010514 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 8.0e-08 62.0 38 71.1
CSS0034877 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 8.0e-08 62.0 38 71.1
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 1.4e-07 61.2 45 60.0
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 1.4e-07 61.2 45 60.0
BcaC02g08202 Brassica carinata HOM05D000127 ORTHO05D000243 2.6e-06 57.0 45 62.2
Ah.07g201980 Amaranthus hybridus HOM05D006283 ORTHO05D007727 9.8e-06 55.1 85 40.0


User provided reference genes

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