Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 7.9e-225 783.5 406 100.0
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 1.6e-161 573.2 394 76.9
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 8.1e-161 570.9 426 74.4
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 5.6e-122 441.8 384 60.7
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 9.0e-120 434.5 383 60.3
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 2.6e-119 433.0 455 52.5
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 3.4e-119 432.6 492 51.2
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 5.8e-119 431.8 408 57.4
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 4.9e-118 428.7 426 56.1
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 7.1e-117 424.9 406 57.1
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 2.7e-116 422.9 371 58.8
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 5.7e-114 415.2 389 58.1
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 3.1e-112 409.5 439 52.2
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 4.1e-112 409.1 438 51.8
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 9.0e-112 407.9 362 60.2
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 1.2e-111 407.5 402 56.5
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 1.2e-111 407.5 420 55.7
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 2.0e-111 406.8 378 57.9
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 3.4e-111 406.0 378 57.7
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 4.5e-111 405.6 394 55.1
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.3e-110 404.1 413 54.2
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 2.9e-110 402.9 419 53.0
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 6.5e-110 401.7 433 53.8
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 6.5e-110 401.7 384 56.8
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 8.5e-110 401.4 366 57.1
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 1.1e-109 401.0 406 54.4
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 1.4e-109 400.6 374 58.0
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 1.9e-109 400.2 397 55.2
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 3.2e-109 399.4 366 55.5
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 3.2e-109 399.4 438 53.4
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 4.2e-109 399.1 299 65.2
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 4.2e-109 399.1 428 51.4
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 4.2e-109 399.1 363 58.4
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 7.2e-109 398.3 449 52.6
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 2.1e-108 396.7 449 51.7
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 2.7e-108 396.4 449 52.6
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 1.0e-107 394.4 394 57.1
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 1.4e-107 394.0 391 54.7
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 1.8e-107 393.7 407 55.0
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 3.9e-107 392.5 367 57.2
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 5.1e-107 392.1 385 56.1
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 6.7e-107 391.7 395 54.9
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 8.8e-107 391.3 409 52.8
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 1.5e-106 390.6 409 52.8
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 2.0e-106 390.2 299 63.5
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 4.3e-106 389.0 406 53.7
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 5.7e-106 388.7 363 56.7
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 5.7e-106 388.7 383 55.6
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 1.3e-105 387.5 313 59.1
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 2.2e-105 386.7 385 55.1
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 4.8e-105 385.6 293 64.2
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 1.1e-104 384.4 417 51.1
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.4e-104 384.0 413 53.0
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 1.4e-104 384.0 392 55.1
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 4.1e-104 382.5 374 57.0
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 4.1e-104 382.5 413 52.8
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 5.3e-104 382.1 409 52.6
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 5.3e-104 382.1 405 52.6
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 1.5e-103 380.6 411 53.5
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 1.5e-103 380.6 438 52.1
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 2.0e-103 380.2 372 55.4
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 2.6e-103 379.8 360 58.1
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 2.6e-103 379.8 325 60.0
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 7.7e-103 378.3 366 55.5
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 1.8e-99 367.1 342 56.4
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 3.9e-99 365.9 410 48.3
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 5.1e-99 365.5 392 50.5
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 9.7e-98 361.3 431 46.9
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 2.2e-97 360.1 323 57.0
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 1.1e-96 357.8 401 50.1
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 1.1e-96 357.8 384 51.8
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 2.4e-96 356.7 378 52.4
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.4e-96 356.7 362 55.0
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 4.1e-96 355.9 378 52.1
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 1.2e-95 354.4 383 52.0
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 1.5e-95 354.0 381 51.2
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 3.5e-95 352.8 366 52.2
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 6.5e-94 348.6 379 50.4
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 6.5e-94 348.6 436 49.1
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 1.2e-92 344.4 422 47.9
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 1.2e-92 344.4 298 57.4
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 1.8e-91 340.5 415 46.0
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 3.0e-91 339.7 294 60.5
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 3.9e-91 339.3 403 48.6
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 1.5e-90 337.4 318 57.9
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 7.4e-90 335.1 398 48.2
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 2.2e-89 333.6 320 58.4
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 1.1e-88 331.3 370 49.7
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 9.1e-88 328.2 444 44.8
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 3.5e-87 326.2 333 53.5
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 3.5e-87 326.2 374 50.3
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 5.5e-85 318.9 404 45.8
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 5.2e-83 312.4 258 59.3
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 1.7e-78 297.4 278 55.8
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 2.2e-73 280.4 289 53.6
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 9.8e-66 255.0 397 40.3
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 4.9e-65 252.7 325 45.5
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 1.6e-63 247.7 272 53.7
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 2.9e-62 243.4 299 47.8
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 2.3e-59 233.8 297 44.4
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 3.1e-59 233.4 397 38.5
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 6.8e-59 232.3 380 39.2
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 8.3e-57 225.3 283 42.4
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 3.1e-51 206.8 202 51.5
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.1e-48 198.4 171 57.9
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 3.3e-45 186.8 166 58.4
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 4.3e-45 186.4 283 43.5
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 1.2e-42 178.3 230 45.2
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 5.1e-38 162.9 232 42.2
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 8.1e-36 155.6 122 65.6
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 1.1e-35 155.2 122 62.3
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 1.1e-35 155.2 151 53.0
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 2.2e-33 147.5 229 35.4
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 7.8e-31 139.0 126 57.1
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 1.7e-30 137.9 140 52.1
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 1.9e-29 134.4 221 37.1
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 9.6e-29 132.1 207 40.6
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.6e-28 131.3 121 58.7
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.2e-26 125.2 125 54.4
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.2e-26 125.2 125 54.4
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 4.9e-25 119.8 88 64.8
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 5.6e-21 106.3 63 76.2
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.3e-14 84.3 50 74.0
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 3.3e-13 80.5 64 54.7
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 7.4e-13 79.3 47 74.5
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 8.1e-12 75.9 68 57.4
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 4.0e-11 73.6 119 40.3
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 2.0e-10 71.2 110 34.5
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 3.2e-08 63.9 46 63.0
GSVIVG01038299001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.8e-06 58.2 44 68.2


User provided reference genes

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