Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.7e-111 406.0 205 100.0
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.2e-56 223.8 180 66.1
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 9.7e-54 214.2 158 62.7
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 2.2e-53 213.0 197 57.4
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 2.8e-53 212.6 156 64.1
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 4.8e-53 211.8 195 54.4
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 4.8e-53 211.8 171 59.6
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 8.2e-53 211.1 160 65.0
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 8.2e-53 211.1 194 58.2
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 8.2e-53 211.1 159 64.8
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.8e-52 209.9 197 54.8
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 3.1e-52 209.1 204 56.4
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 4.1e-52 208.8 142 66.9
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 6.9e-52 208.0 160 65.0
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 9.1e-52 207.6 165 61.2
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 9.1e-52 207.6 198 57.1
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.2e-51 207.2 202 54.5
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 1.2e-51 207.2 160 65.0
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 1.2e-51 207.2 160 65.0
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.5e-51 206.8 173 57.8
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.5e-51 206.8 198 55.6
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.5e-51 206.8 198 55.6
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 2.0e-51 206.5 134 70.9
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.0e-51 206.5 163 63.2
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.0e-51 206.5 163 63.2
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.0e-51 206.5 176 57.4
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 2.0e-51 206.5 158 60.8
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 2.6e-51 206.1 194 53.6
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.5e-51 205.3 163 63.2
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 4.5e-51 205.3 171 57.3
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 5.9e-51 204.9 193 56.0
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 5.9e-51 204.9 155 61.9
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 5.9e-51 204.9 157 61.8
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 5.9e-51 204.9 214 50.5
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 7.7e-51 204.5 189 58.7
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 7.7e-51 204.5 199 54.8
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 7.7e-51 204.5 160 61.9
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 7.7e-51 204.5 158 60.8
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.0e-50 204.1 169 59.8
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.3e-50 203.8 173 58.4
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.3e-50 203.8 193 53.9
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.3e-50 203.8 137 77.4
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 2.2e-50 203.0 200 53.5
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 2.2e-50 203.0 206 53.4
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.9e-50 202.6 160 60.6
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.9e-50 202.6 160 60.6
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 3.8e-50 202.2 204 52.0
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 5.0e-50 201.8 200 54.0
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 5.0e-50 201.8 203 55.7
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.0e-50 201.8 160 60.6
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 5.0e-50 201.8 168 58.9
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 5.0e-50 201.8 197 55.8
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 6.5e-50 201.4 161 60.2
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 6.5e-50 201.4 187 55.6
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 8.5e-50 201.1 173 56.6
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 8.5e-50 201.1 165 58.8
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 1.1e-49 200.7 161 62.7
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.1e-49 200.7 168 58.3
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.1e-49 200.7 149 65.1
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.4e-49 200.3 206 52.4
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.4e-49 200.3 160 60.0
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.4e-49 200.3 160 60.0
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.4e-49 200.3 198 53.5
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.9e-49 199.9 163 61.3
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.9e-49 199.9 168 58.3
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 2.5e-49 199.5 157 59.9
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 2.5e-49 199.5 166 56.6
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 2.5e-49 199.5 162 58.6
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 2.5e-49 199.5 159 60.4
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 4.2e-49 198.7 176 58.0
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 4.2e-49 198.7 188 53.7
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 5.5e-49 198.4 188 55.3
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 5.5e-49 198.4 207 51.7
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 5.5e-49 198.4 169 55.6
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 9.4e-49 197.6 175 54.9
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 9.4e-49 197.6 165 59.4
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.2e-48 197.2 175 54.9
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 1.2e-48 197.2 160 59.4
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 1.6e-48 196.8 194 55.2
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.6e-48 196.8 194 54.1
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.6e-48 196.8 179 58.1
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 2.1e-48 196.4 141 64.5
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 2.1e-48 196.4 149 64.4
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.1e-48 196.4 209 49.3
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 2.7e-48 196.1 176 58.5
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 3.6e-48 195.7 160 61.2
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 3.6e-48 195.7 165 58.8
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 3.6e-48 195.7 176 56.2
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 3.6e-48 195.7 161 60.2
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 4.6e-48 195.3 155 61.9
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 4.6e-48 195.3 155 61.9
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 6.1e-48 194.9 156 59.6
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 6.1e-48 194.9 171 59.6
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 6.1e-48 194.9 161 60.2
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.0e-47 194.1 178 53.4
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 1.0e-47 194.1 195 52.3
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 1.4e-47 193.7 193 53.9
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.8e-47 193.4 194 54.6
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 3.0e-47 192.6 172 58.7
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 3.0e-47 192.6 192 51.6
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 3.0e-47 192.6 182 53.8
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 3.0e-47 192.6 192 51.6
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 3.0e-47 192.6 175 54.9
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 3.0e-47 192.6 170 59.4
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 3.9e-47 192.2 192 51.6
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 3.9e-47 192.2 175 55.4
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 5.1e-47 191.8 164 57.3
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 5.1e-47 191.8 215 48.4
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 5.1e-47 191.8 161 59.6
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 6.7e-47 191.4 158 59.5
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 8.8e-47 191.0 155 61.3
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 8.8e-47 191.0 159 59.7
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 8.8e-47 191.0 174 53.4
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 8.8e-47 191.0 174 53.4
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.5e-46 190.3 160 58.8
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.5e-46 190.3 174 52.9
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 3.3e-46 189.1 186 51.6
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 3.3e-46 189.1 164 57.3
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 4.4e-46 188.7 165 57.6
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 4.4e-46 188.7 159 58.5
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 2.2e-45 186.4 190 51.6
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 3.7e-45 185.7 157 59.2
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 3.7e-45 185.7 158 58.2
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.7e-45 185.7 201 48.8
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 3.7e-45 185.7 126 67.5
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.1e-44 184.1 137 61.3
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.1e-44 184.1 205 46.3
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.8e-44 183.3 199 49.2
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 2.4e-44 183.0 155 56.1
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.4e-44 183.0 137 61.3
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 3.1e-44 182.6 206 48.1
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 3.1e-44 182.6 178 53.4
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.1e-44 182.2 204 48.5
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 5.3e-44 181.8 162 55.6
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.5e-43 178.7 161 52.2
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 4.5e-43 178.7 173 51.4
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.7e-42 176.8 161 51.6
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 3.8e-42 175.6 134 59.0
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 3.8e-42 175.6 124 64.5
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 5.0e-42 175.3 199 50.3
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 6.5e-42 174.9 169 54.4
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 2.5e-41 172.9 174 52.9
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 5.2e-39 165.2 179 47.5
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.6e-38 162.9 123 57.7
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.3e-37 160.6 123 57.7
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.7e-37 160.2 159 50.9
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 3.7e-37 159.1 162 52.5
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 6.3e-37 158.3 124 56.5
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 8.2e-37 157.9 162 51.2
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.1e-36 155.6 215 42.8
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 9.1e-36 154.5 205 43.4
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.6e-35 153.7 126 52.4
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 2.0e-35 153.3 162 48.1
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 7.7e-35 151.4 201 42.8
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 7.7e-35 151.4 197 43.7
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.2e-34 149.8 168 48.8
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.0e-34 148.7 162 47.5
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 8.5e-34 147.9 201 42.8
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 3.2e-33 146.0 165 47.3
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 4.2e-33 145.6 217 42.4
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 5.5e-33 145.2 118 55.1
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 2.7e-32 142.9 174 44.3
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 2.7e-32 142.9 158 48.1
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 8.0e-32 141.4 165 50.9
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 6.7e-31 138.3 131 48.1
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 8.8e-31 137.9 106 57.5
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 4.4e-30 135.6 169 48.5
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 5.7e-30 135.2 205 40.5
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 4.8e-29 132.1 77 72.7
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 3.5e-27 125.9 169 38.5
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.9e-26 122.9 84 67.9
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 9.4e-25 117.9 183 35.5
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 9.4e-25 117.9 183 35.5
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 1.7e-21 107.1 178 36.0
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 4.8e-21 105.5 58 74.1
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.1e-20 104.4 119 47.1
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 1.9e-17 93.6 54 74.1
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 5.5e-17 92.0 49 73.5


User provided reference genes

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