Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 1.3e-227 792.7 412 100.0
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.1e-189 666.8 409 83.9
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 2.4e-160 569.3 406 73.4
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 2.9e-158 562.4 394 74.4
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.2e-153 546.2 399 73.2
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.1e-152 543.9 399 72.9
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 1.2e-151 540.4 401 72.1
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 5.9e-151 538.1 400 71.2
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 8.5e-150 534.3 400 70.8
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 4.2e-149 531.9 303 87.5
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 2.7e-148 529.3 370 73.5
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 3.6e-148 528.9 394 71.1
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 7.9e-148 527.7 398 70.4
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 3.9e-147 525.4 398 69.6
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 6.7e-147 524.6 413 68.8
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 8.8e-147 524.2 403 70.2
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.1e-146 523.9 370 72.7
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.1e-146 523.9 382 71.5
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 4.4e-146 521.9 413 68.0
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 7.4e-146 521.2 401 67.1
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 9.7e-146 520.8 397 68.5
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 1.3e-145 520.4 391 69.8
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 8.2e-145 517.7 340 77.6
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.8e-144 516.5 354 74.6
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 2.4e-144 516.2 398 68.8
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 2.4e-144 516.2 402 68.2
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 4.1e-144 515.4 395 68.4
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 5.3e-144 515.0 407 66.6
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.2e-143 513.8 396 66.9
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.2e-143 513.8 396 66.9
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.5e-143 513.5 403 66.5
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 2.0e-143 513.1 394 68.8
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 2.6e-143 512.7 380 70.3
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 5.9e-143 511.5 382 70.4
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 7.7e-143 511.1 378 70.1
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 2.9e-142 509.2 400 66.0
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 2.9e-142 509.2 388 68.6
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 6.5e-142 508.1 393 67.7
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 8.5e-142 507.7 411 66.7
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.1e-141 507.3 380 67.9
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.1e-141 507.3 399 67.7
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 1.1e-141 507.3 396 66.2
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.5e-141 506.9 392 69.4
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.5e-141 506.1 401 65.8
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.5e-141 505.0 399 67.7
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.2e-140 503.8 410 66.8
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 1.2e-140 503.8 333 77.2
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 2.1e-140 503.1 387 68.2
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.1e-140 501.5 399 67.4
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.8e-139 500.0 394 66.5
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 1.8e-139 500.0 466 60.3
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.8e-139 500.0 393 66.4
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 2.3e-139 499.6 389 67.6
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 3.0e-139 499.2 400 67.0
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.7e-139 498.0 400 66.8
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.1e-138 497.3 408 65.0
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 1.5e-138 496.9 390 66.7
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 4.4e-138 495.4 399 65.9
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 4.4e-138 495.4 399 65.9
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 5.7e-138 495.0 397 66.0
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 5.7e-138 495.0 388 64.7
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 7.5e-138 494.6 349 70.5
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 7.5e-138 494.6 397 66.0
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.7e-138 494.2 400 66.5
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 1.3e-137 493.8 406 62.3
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.7e-137 493.4 409 67.0
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 2.2e-137 493.0 350 71.4
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 6.3e-137 491.5 353 70.5
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.1e-136 490.7 362 67.1
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 2.4e-136 489.6 396 65.9
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.4e-136 489.6 349 70.8
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 2.4e-136 489.6 350 69.7
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 3.1e-136 489.2 392 66.3
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 2.6e-135 486.1 408 63.5
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 3.5e-135 485.7 351 69.2
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.0e-134 484.2 365 66.6
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 1.7e-134 483.4 351 69.2
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 1.7e-134 483.4 351 69.2
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 2.2e-134 483.0 412 60.9
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 2.9e-134 482.6 351 68.7
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 5.0e-134 481.9 371 66.3
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 5.0e-134 481.9 403 64.0
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 8.5e-134 481.1 371 66.3
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 8.5e-134 481.1 363 67.5
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 1.9e-133 479.9 371 66.0
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.2e-132 477.2 376 64.9
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 2.7e-132 476.1 332 72.6
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 3.6e-132 475.7 371 66.0
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 2.3e-131 473.0 399 63.2
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 5.2e-131 471.9 397 64.7
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 6.8e-131 471.5 395 63.0
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 2.0e-130 469.9 378 63.5
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 2.0e-130 469.9 377 63.9
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 4.4e-130 468.8 385 63.6
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 5.7e-130 468.4 396 60.6
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.3e-129 467.2 349 68.5
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 2.2e-129 466.5 350 68.9
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 3.7e-129 465.7 357 66.9
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 4.8e-129 465.3 380 63.4
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 2.4e-128 463.0 389 63.8
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 9.1e-128 461.1 349 67.0
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 3.5e-127 459.1 389 61.4
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 3.5e-127 459.1 388 63.9
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 4.5e-127 458.8 406 59.6
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 4.5e-127 458.8 400 61.0
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.0e-126 457.6 331 68.3
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 3.8e-126 455.7 392 63.3
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 6.1e-124 448.4 335 66.6
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 1.5e-122 443.7 340 68.8
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 7.5e-122 441.4 379 62.3
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 4.3e-117 425.6 401 58.1
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.2e-116 424.1 335 65.4
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.4e-115 420.6 312 68.3
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.6e-114 416.4 353 60.9
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 3.7e-113 412.5 391 56.5
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.3e-110 403.3 337 60.2
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.1e-107 392.9 338 60.4
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 3.2e-104 382.9 333 56.2
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.9e-101 373.6 347 55.3
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.3e-101 371.7 325 56.3
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 2.1e-95 353.6 402 53.5
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 5.1e-94 349.0 398 52.3
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 1.5e-93 347.4 311 53.4
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 7.1e-88 328.6 283 64.7
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 1.6e-87 327.4 429 49.4
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 4.9e-81 305.8 280 58.6
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 4.4e-74 282.7 334 48.5
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.7e-73 280.8 313 45.0
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.2e-73 280.4 311 48.9
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 8.4e-73 278.5 318 45.9
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.9e-69 267.3 341 42.8
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.3e-69 266.2 292 49.0
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.9e-65 252.7 282 45.7
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.4e-65 252.3 328 40.5
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-64 250.8 215 65.6
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.2e-64 250.0 294 44.9
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.7e-63 246.9 283 44.5
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.0e-63 245.7 288 44.8
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.0e-62 245.0 245 55.5
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.3e-62 244.6 176 67.0
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 2.3e-62 243.8 322 41.9
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.4e-59 234.6 226 59.3
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-57 228.4 267 43.1
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 3.5e-55 219.9 149 77.9
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 3.3e-53 213.4 175 63.4
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 4.1e-51 206.5 359 37.9
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.1e-47 192.6 153 56.9
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 8.2e-44 182.2 158 63.3
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.1e-43 179.9 318 36.2
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.3e-43 179.5 329 34.7
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.3e-43 179.5 318 36.2
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-42 177.9 318 35.8
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.5e-42 176.4 121 78.5
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 7.2e-40 169.1 218 44.0
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.7e-39 167.2 320 33.4
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.3e-38 164.1 147 58.5
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.9e-38 163.3 311 31.5
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.3e-35 152.9 314 30.3
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-31 141.7 291 33.7
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.6e-31 140.2 334 30.2
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 6.3e-28 129.4 117 53.8
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.6e-26 124.8 217 32.7
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.5e-26 123.6 103 53.4
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 1.0e-25 122.1 77 81.8
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 5.0e-25 119.8 323 28.8
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 6.5e-25 119.4 80 76.2
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.5e-24 118.2 338 27.8
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.2e-24 116.7 293 28.3
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.5e-24 116.3 168 39.3
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.2e-24 115.9 314 29.9
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.1e-23 114.4 100 58.0
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.3e-22 110.9 314 30.3
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 9.1e-19 99.0 321 28.0
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 2.0e-18 97.8 295 27.1
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 4.2e-16 90.1 356 25.0
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 9.8e-13 79.0 59 67.8
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.8e-09 67.0 143 33.6
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-07 61.6 89 42.7


User provided reference genes

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