Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0522391 Helianthus annuus HOM05D005028 ORTHO05D006028 5.4e-134 481.1 261 100.0
Lsat_1_v5_gn_4_35880 Lactuca sativa HOM05D005028 ORTHO05D006028 3.0e-84 315.8 229 72.5
ECA234G2903 Erigeron canadensis HOM05D005028 ORTHO05D006028 2.7e-77 292.7 213 72.8
Cc02_g38190 Coffea canephora HOM05D005028 ORTHO05D006028 2.9e-63 246.1 173 68.2
TWI23G0157 Tripterygium wilfordii HOM05D005028 ORTHO05D006028 9.4e-62 241.1 188 63.8
Lsat_1_v5_gn_7_18681 Lactuca sativa HOM05D005028 ORTHO05D006028 1.4e-60 237.3 225 57.8
Lj7A510T39 Lonicera japonica HOM05D005028 ORTHO05D006028 1.5e-59 233.8 188 63.3
GSVIVG01026950001 Vitis vinifera HOM05D005028 ORTHO05D006028 3.3e-59 232.6 209 56.9
Lsat_1_v5_gn_7_4161 Lactuca sativa HOM05D005028 ORTHO05D006028 4.4e-59 232.3 224 56.7
SGA_v2.0_scaffold95G28829 Striga asiatica HOM05D005028 ORTHO05D006028 7.5e-59 231.5 162 69.1
Manes.05G033100 Manihot esculenta HOM05D005028 ORTHO05D006028 1.3e-58 230.7 180 61.7
Dinv32494 Davidia involucrata HOM05D005028 ORTHO05D006028 1.7e-58 230.3 188 62.2
HanXRQChr06g0170181 Helianthus annuus HOM05D005028 ORTHO05D006028 3.7e-58 229.2 228 53.1
Nn1g01568 Nelumbo nucifera HOM05D005028 ORTHO05D006028 6.3e-58 228.4 201 57.2
Atru.chr5.513 Acer truncatum HOM05D005028 ORTHO05D006028 8.2e-58 228.0 192 56.2
Nitab4.5_0002811g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 1.8e-57 226.9 178 61.8
vmacro13267 Vaccinium macrocarpon HOM05D005028 ORTHO05D006028 3.1e-57 226.1 189 59.3
Actinidia10042 Actinidia chinensis HOM05D005028 ORTHO05D006028 4.1e-57 225.7 188 60.6
Nitab4.5_0000386g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 7.0e-57 224.9 172 62.2
Oeu052955.1 Olea europaea HOM05D005028 ORTHO05D006028 1.2e-56 224.2 183 62.8
QL04p053913 Quercus lobata HOM05D005028 ORTHO05D006028 1.2e-56 224.2 164 68.3
Peaxi162Scf00008g02424 Petunia axillaris HOM05D005028 ORTHO05D006028 2.0e-56 223.4 179 62.6
Solyc10g012400.3 Solanum lycopersicum HOM05D005028 ORTHO05D006028 2.7e-56 223.0 173 61.3
Sopen10g006230 Solanum pennellii HOM05D005028 ORTHO05D006028 2.7e-56 223.0 173 61.3
Migut.B01770 Erythranthe guttata HOM05D005028 ORTHO05D006028 4.5e-56 222.2 167 62.3
Duzib138G1785 Durio zibethinus HOM05D005028 ORTHO05D006028 5.9e-56 221.9 189 58.2
Actinidia20894 Actinidia chinensis HOM05D005028 ORTHO05D006028 1.0e-55 221.1 189 60.3
ClCG05G001460 Citrullus lanatus HOM05D005028 ORTHO05D006028 1.0e-55 221.1 170 61.8
RcHm_v2.0_Chr1g0356151 Rosa chinensis HOM05D005028 ORTHO05D006028 1.0e-55 221.1 201 59.2
Thecc.01G357500 Theobroma cacao HOM05D005028 ORTHO05D006028 1.7e-55 220.3 182 59.9
Hma1.2p1_0780F.1_g216740 Hydrangea macrophylla HOM05D005028 ORTHO05D006028 2.2e-55 219.9 186 58.1
MELO3C006103.2 Cucumis melo HOM05D005028 ORTHO05D006028 2.9e-55 219.5 170 61.2
CANSAT56G0390 Cannabis sativa HOM05D005028 ORTHO05D006028 5.0e-55 218.8 183 59.6
Haze_15525 Corylus avellana HOM05D005028 ORTHO05D006028 5.0e-55 218.8 190 60.5
CiPaw.02G032200 Carya illinoinensis HOM05D005028 ORTHO05D006028 6.5e-55 218.4 181 63.5
PGSC0003DMG400006503 Solanum tuberosum HOM05D005028 ORTHO05D006028 6.5e-55 218.4 173 60.1
Potri.014G086200 Populus trichocarpa HOM05D005028 ORTHO05D006028 1.1e-54 217.6 192 56.8
Cfa003905 Carpinus fangiana HOM05D005028 ORTHO05D006028 2.5e-54 216.5 190 59.5
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 2.5e-54 216.5 170 60.0
TAR374G1129 Trochodendron aralioides HOM05D005028 ORTHO05D006028 2.5e-54 216.5 201 56.7
TAR375G0288 Trochodendron aralioides HOM05D005028 ORTHO05D006028 2.5e-54 216.5 202 55.4
unitig_26.g9301 Utricularia gibba HOM05D000773 ORTHO05D006028 4.2e-54 215.7 172 58.7
CAN.G116.15 Capsicum annuum HOM05D005028 ORTHO05D006028 5.5e-54 215.3 178 58.4
PSO210G4593 Papaver somniferum HOM05D005028 ORTHO05D006028 7.2e-54 214.9 195 58.5
Eucgr.E00119 Eucalyptus grandis HOM05D005028 ORTHO05D006028 9.4e-54 214.5 191 58.1
Prupe.2G172500 Prunus persica HOM05D005028 ORTHO05D006028 9.4e-54 214.5 176 60.8
MD01G1065300 Malus domestica HOM05D005028 ORTHO05D006028 1.2e-53 214.2 183 59.6
PGR042G1182 Punica granatum HOM05D005028 ORTHO05D006028 2.7e-53 213.0 166 61.4
DCAR_015106 Daucus carota HOM05D005028 ORTHO05D006028 3.6e-53 212.6 175 61.7
AUR62022583 Chenopodium quinoa HOM05D005028 ORTHO05D006028 6.1e-53 211.8 183 57.4
Sabra14G0062500 Salix brachista HOM05D005028 ORTHO05D006028 8.0e-53 211.5 168 58.9
Nitab4.5_0000583g0210 Nicotiana tabacum HOM05D005028 ORTHO05D006028 1.4e-52 210.7 171 60.2
PSO832G0747 Papaver somniferum HOM05D005028 ORTHO05D006028 1.4e-52 210.7 195 58.5
Nitab4.5_0006018g0040 Nicotiana tabacum HOM05D005028 ORTHO05D006028 1.8e-52 210.3 171 60.8
THA.LOC104802036 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 1.8e-52 210.3 183 58.5
MSTRG.20842 Avicennia marina HOM05D005028 ORTHO05D006028 3.0e-52 209.5 156 64.7
Gohir.D07G147300 Gossypium hirsutum HOM05D005028 ORTHO05D006028 3.0e-52 209.5 181 55.8
MBI18_g02833_MAGBIO Magnolia biondii HOM05D005028 ORTHO05D006028 3.0e-52 209.5 183 59.0
Haze_01381 Corylus avellana HOM05D005028 ORTHO05D006028 5.2e-52 208.8 186 59.7
Ah.05g180490 Amaranthus hybridus HOM05D005028 ORTHO05D006028 6.8e-52 208.4 183 55.7
DCAR_007443 Daucus carota HOM05D005028 ORTHO05D006028 8.8e-52 208.0 159 63.5
Cpa.g.sc11.21 Carica papaya HOM05D005028 ORTHO05D006028 1.2e-51 207.6 194 56.7
AUR62004377 Chenopodium quinoa HOM05D005028 ORTHO05D006028 1.5e-51 207.2 183 55.7
FvH4_7g14630 Fragaria vesca HOM05D005028 ORTHO05D006028 3.4e-51 206.1 220 50.9
FAN06G2873 Fragaria x ananassa HOM05D005028 ORTHO05D006028 3.4e-51 206.1 220 50.9
MD07G1135200 Malus domestica HOM05D005028 ORTHO05D006028 4.4e-51 205.7 180 58.3
Sed0007874 Sechium edule HOM05D005028 ORTHO05D006028 7.5e-51 204.9 180 56.7
FAN06G0569 Fragaria x ananassa HOM05D005028 ORTHO05D006028 9.8e-51 204.5 220 50.5
EL10Ac1g00399 Beta vulgaris HOM05D005028 ORTHO05D006028 1.3e-50 204.1 183 55.7
Ciclev10022241m.g Citrus clementina HOM05D005028 ORTHO05D006028 1.7e-50 203.8 170 57.1
FAN01G1655 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.7e-50 203.8 168 58.9
FAN03G1762 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.7e-50 203.8 191 55.0
FAN10G3452 Fragaria x ananassa HOM05D005028 ORTHO05D006028 2.2e-50 203.4 191 55.5
Gohir.A07G141900 Gossypium hirsutum HOM05D005028 ORTHO05D006028 2.8e-50 203.0 181 54.1
THA.LOC104817298 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 3.7e-50 202.6 183 56.3
FAN10G4091 Fragaria x ananassa HOM05D005028 ORTHO05D006028 6.3e-50 201.8 191 55.0
Phvul.008G061400 Phaseolus vulgaris HOM05D005028 ORTHO05D006028 3.1e-49 199.5 190 55.3
QL04p053899 Quercus lobata HOM05D005028 ORTHO05D006028 1.6e-48 197.2 171 56.7
Ca_07933_v3 Cicer arietinum L. HOM05D005028 ORTHO05D006028 2.0e-48 196.8 173 54.9
Sc23g0002800 Simmondsia chinensis HOM05D005028 ORTHO05D006028 2.7e-48 196.4 178 51.7
arahy.Tifrunner.gnm1.ann1.US4SCG Arachis hypogaea HOM05D005028 ORTHO05D006028 5.9e-48 195.3 193 50.8
Glyma.18G234400 Glycine max HOM05D005028 ORTHO05D006028 1.0e-47 194.5 173 54.9
VMungo1383G1301 Vigna mungo HOM05D005028 ORTHO05D006028 1.0e-47 194.5 189 54.0
arahy.Tifrunner.gnm1.ann1.C7F7IC Arachis hypogaea HOM05D005028 ORTHO05D006028 1.3e-47 194.1 211 48.8
arahy.Tifrunner.gnm1.ann1.EZF1CG Arachis hypogaea HOM05D005028 ORTHO05D006028 1.3e-47 194.1 193 50.8
A03p25430 Brassica napus HOM05D005028 ORTHO05D006028 1.3e-47 194.1 183 55.2
Lj1g0018179 Lotus japonicus HOM05D005028 ORTHO05D006028 1.7e-47 193.7 176 53.4
Gorai.001G168500 Gossypium raimondii HOM05D005028 ORTHO05D006028 2.2e-47 193.4 212 47.6
AL4G45230 Arabidopsis lyrata HOM05D005028 ORTHO05D006028 1.5e-46 190.7 183 55.7
HPP92_025966 Vanilla planifolia HOM05D005028 ORTHO05D006028 5.5e-46 188.7 176 53.4
Glyma.09G258300 Glycine max HOM05D005028 ORTHO05D006028 1.2e-45 187.6 173 53.8
Psat3g107720 Pisum sativum HOM05D005028 ORTHO05D006028 3.6e-45 186.0 173 52.6
Rhsim07G0013700 Rhododendron simsii HOM05D005028 ORTHO05D006028 3.6e-45 186.0 194 55.2
TPR.G37810 Trifolium pratense HOM05D005028 ORTHO05D006028 6.1e-45 185.3 189 50.3
Lalb_Chr04g0253811 Lupinus albus HOM05D005028 ORTHO05D006028 8.0e-45 184.9 173 54.3
Medtr7g077890 Medicago truncatula HOM05D005028 ORTHO05D006028 2.3e-44 183.3 171 53.2
ATR0680G399 Amborella trichopoda HOM05D005028 ORTHO05D006028 6.8e-44 181.8 183 51.4
CDE09G1157 Ceratophyllum demersum HOM05D005028 ORTHO05D006028 6.8e-44 181.8 175 53.7
Solyc01g094780.4 Solanum lycopersicum HOM05D005028 ORTHO05D006028 8.8e-44 181.4 154 55.8
PGSC0003DMG400000176 Solanum tuberosum HOM05D005028 ORTHO05D006028 8.8e-44 181.4 155 56.1
Aqoxy7G00275 Aquilegia oxysepala HOM05D005028 ORTHO05D006028 1.5e-43 180.6 201 51.2
SMO203G0053 Selaginella moellendorffii HOM05D005028 ORTHO05D006028 2.0e-43 180.3 167 54.5
AagrBONN_evm.TU.Sc2ySwM_228.1428 Anthoceros agrestis HOM05D005028 ORTHO05D006028 5.7e-43 178.7 177 50.3
HanXRQChr04g0121191 Helianthus annuus HOM05D005028 ORTHO05D006028 2.8e-42 176.4 167 53.3
SalBow3G2695 Salvia bowleyana HOM05D005028 ORTHO05D006028 3.7e-42 176.0 173 52.0
Zm00001eb003870 Zea mays HOM05D005028 ORTHO05D006028 4.9e-42 175.6 178 51.1
C03p30330 Brassica napus HOM05D005028 ORTHO05D006028 6.3e-42 175.3 197 48.7
BolC3t15383H Brassica oleracea HOM05D005028 ORTHO05D006028 6.3e-42 175.3 197 48.7
A04p34210 Brassica napus HOM05D005028 ORTHO05D006028 1.1e-41 174.5 193 50.3
C04p72030 Brassica napus HOM05D005028 ORTHO05D006028 1.1e-41 174.5 193 50.3
BraA04t18882Z Brassica rapa HOM05D005028 ORTHO05D006028 1.1e-41 174.5 193 50.3
BolC4t28699H Brassica oleracea HOM05D005028 ORTHO05D006028 1.4e-41 174.1 193 50.3
Thhalv10001635m.g Eutrema salsugineum HOM05D005028 ORTHO05D006028 1.4e-41 174.1 183 52.5
Os03g0148300 Oryza sativa ssp. japonica HOM05D005028 ORTHO05D006028 1.4e-41 174.1 150 56.0
AT2G46000 Arabidopsis thaliana HOM05D005028 ORTHO05D006028 2.4e-41 173.3 177 51.4
Carub.0004s2870 Capsella rubella HOM05D005028 ORTHO05D006028 2.4e-41 173.3 183 52.5
Peaxi162Scf00020g00731 Petunia axillaris HOM05D005028 ORTHO05D006028 3.1e-41 172.9 172 54.1
Zm00001eb402990 Zea mays HOM05D005028 ORTHO05D006028 9.2e-41 171.4 159 52.2
COL.COLO4_12727 Corchorus olitorius HOM05D005028 ORTHO05D006028 1.2e-40 171.0 197 46.7
BcaC02g12158 Brassica carinata HOM05D005028 ORTHO05D006028 1.6e-40 170.6 175 52.6
Sp4g28070 Schrenkiella parvula HOM05D005028 ORTHO05D006028 2.7e-40 169.9 177 49.7
Aa31LG1G27410 Aethionema arabicum HOM05D005028 ORTHO05D006028 4.5e-40 169.1 172 49.4
CARHR141270 Cardamine hirsuta HOM05D005028 ORTHO05D006028 1.3e-39 167.5 177 50.3
C04p06920 Brassica napus HOM05D005028 ORTHO05D006028 1.5e-38 164.1 192 49.5
BolC4t22313H Brassica oleracea HOM05D005028 ORTHO05D006028 1.5e-38 164.1 192 49.5
A05p05990 Brassica napus HOM05D005028 ORTHO05D006028 4.3e-38 162.5 192 49.0
BraA05t19562Z Brassica rapa HOM05D005028 ORTHO05D006028 4.3e-38 162.5 192 49.0
BraA03t11762Z Brassica rapa HOM05D005028 ORTHO05D006028 9.5e-38 161.4 156 54.5
Mapoly0023s0066 Marchantia polymorpha HOM05D005028 ORTHO05D006028 1.6e-37 160.6 148 51.4
BcaC01g05100 Brassica carinata HOM05D005028 ORTHO05D006028 2.6e-35 153.3 160 51.2
Pp3c14_2680 Physcomitrium patens HOM05D005028 ORTHO05D006028 3.2e-33 146.4 166 47.0
Manes.01G255500 Manihot esculenta HOM05D005028 ORTHO05D006028 1.2e-32 144.4 161 49.7
SEGI_06430 Sequoiadendron giganteum HOM05D005028 ORTHO05D006028 1.6e-32 144.1 123 57.7
Ciclev10006561m.g Citrus clementina HOM05D005028 ORTHO05D006028 1.2e-27 127.9 112 54.5
RcHm_v2.0_Chr1g0356451 Rosa chinensis HOM05D005028 ORTHO05D006028 1.4e-25 120.9 111 53.2
A04p17020 Brassica napus HOM05D005028 ORTHO05D006028 3.2e-25 119.8 182 38.5
BraA08t32322Z Brassica rapa HOM05D005028 ORTHO05D006028 1.9e-22 110.5 106 50.0
BcaB01g03242 Brassica carinata HOM05D005028 ORTHO05D006028 9.5e-22 108.2 146 47.9
CANSAT25G0788 Cannabis sativa HOM05D005028 ORTHO05D006028 6.2e-21 105.5 86 59.3
BcaC02g07785 Brassica carinata HOM05D005028 ORTHO05D006028 5.2e-20 102.4 86 52.3
ECA236G3403 Erigeron canadensis HOM05D005028 ORTHO05D006028 8.9e-20 101.7 109 50.5
C09p26600 Brassica napus HOM05D005028 ORTHO05D006028 6.2e-13 79.0 114 37.7
CBR_g3867 Chara braunii HOM05D005028 ORTHO05D006028 1.1e-12 78.2 168 33.3
BcaC02g08371 Brassica carinata HOM05D005028 ORTHO05D006028 2.3e-12 77.0 64 51.6
Cfa010782 Carpinus fangiana HOM05D005028 ORTHO05D006028 3.4e-11 73.2 58 62.1
MCO07G199 Micromonas commoda HOM05D005028 ORTHO05D006028 4.4e-11 72.8 150 28.7
CBR_g38724 Chara braunii HOM05D002446 ORTHO05D002941 1.7e-07 60.8 133 33.8
Atru.chr3.1868 Acer truncatum HOM05D005028 ORTHO05D006028 3.0e-07 60.1 66 51.5
Atru.chr3.1882 Acer truncatum HOM05D005028 ORTHO05D006028 5.1e-07 59.3 65 52.3
arahy.Tifrunner.gnm1.ann1.PAI5YG Arachis hypogaea HOM05D005028 ORTHO05D006028 8.6e-07 58.5 58 50.0
Cre07.g323200 Chlamydomonas reinhardtii HOM05D005028 ORTHO05D141101 3.3e-06 56.6 111 29.7


User provided reference genes

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