Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 2.2e-53 212.2 124 100.0
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 5.9e-14 81.3 45 86.7
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 7.7e-14 80.9 45 84.4
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 3.8e-13 78.6 45 82.2
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 5.0e-13 78.2 45 82.2
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 5.0e-13 78.2 45 82.2
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 5.0e-13 78.2 45 82.2
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 6.5e-13 77.8 45 80.0
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 8.5e-13 77.4 39 92.3
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 1.1e-12 77.0 45 80.0
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 1.1e-12 77.0 45 80.0
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 1.1e-12 77.0 45 80.0
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.1e-12 77.0 45 80.0
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.1e-12 77.0 45 80.0
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.1e-12 77.0 45 80.0
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 1.1e-12 77.0 45 80.0
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 1.1e-12 77.0 45 80.0
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 1.1e-12 77.0 45 80.0
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 1.5e-12 76.6 45 77.8
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 1.5e-12 76.6 45 77.8
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.5e-12 76.6 45 80.0
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 1.5e-12 76.6 45 80.0
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 1.5e-12 76.6 45 80.0
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.9e-12 76.3 39 92.3
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 1.9e-12 76.3 42 83.3
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 1.9e-12 76.3 45 80.0
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 1.9e-12 76.3 45 80.0
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 1.9e-12 76.3 45 80.0
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 1.9e-12 76.3 45 80.0
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 1.9e-12 76.3 45 77.8
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 2.5e-12 75.9 42 81.0
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 2.5e-12 75.9 45 80.0
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 2.5e-12 75.9 39 89.7
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 2.5e-12 75.9 45 77.8
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 2.5e-12 75.9 39 89.7
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 3.2e-12 75.5 42 83.3
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 3.2e-12 75.5 45 77.8
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 4.2e-12 75.1 42 83.3
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 4.2e-12 75.1 42 83.3
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 4.2e-12 75.1 42 81.0
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 5.5e-12 74.7 42 83.3
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 5.5e-12 74.7 45 75.6
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 5.5e-12 74.7 45 77.8
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 5.5e-12 74.7 39 87.2
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 5.5e-12 74.7 42 83.3
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 5.5e-12 74.7 42 83.3
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 5.5e-12 74.7 45 75.6
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 5.5e-12 74.7 45 75.6
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 5.5e-12 74.7 42 83.3
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 5.5e-12 74.7 42 83.3
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 5.5e-12 74.7 42 83.3
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 5.5e-12 74.7 38 89.5
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 7.2e-12 74.3 45 75.6
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 7.2e-12 74.3 45 75.6
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 7.2e-12 74.3 45 75.6
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 7.2e-12 74.3 45 75.6
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 7.2e-12 74.3 45 77.8
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 7.2e-12 74.3 45 77.8
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 7.2e-12 74.3 45 77.8
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 9.4e-12 73.9 45 75.6
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.2e-11 73.6 38 89.5
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.2e-11 73.6 38 89.5
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 1.2e-11 73.6 45 73.3
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 1.2e-11 73.6 45 75.6
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 1.2e-11 73.6 45 75.6
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 1.2e-11 73.6 45 75.6
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.6e-11 73.2 45 77.8
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.6e-11 73.2 45 73.3
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 1.6e-11 73.2 45 75.6
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 1.6e-11 73.2 45 75.6
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 1.6e-11 73.2 38 84.2
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 2.1e-11 72.8 42 78.6
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 2.1e-11 72.8 45 75.6
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 2.1e-11 72.8 38 89.5
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 2.7e-11 72.4 39 84.6
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 3.6e-11 72.0 45 75.6
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 3.6e-11 72.0 45 75.6
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 3.6e-11 72.0 38 86.8
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 4.7e-11 71.6 45 73.3
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 4.7e-11 71.6 45 73.3
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 4.7e-11 71.6 45 73.3
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 6.1e-11 71.2 38 81.6
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 6.1e-11 71.2 38 81.6
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 8.0e-11 70.9 38 84.2
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 8.0e-11 70.9 38 81.6
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 8.0e-11 70.9 38 81.6
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 8.0e-11 70.9 45 73.3
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 1.0e-10 70.5 38 81.6
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.4e-10 70.1 45 73.3
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.8e-10 69.7 39 84.6
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.8e-10 69.7 45 73.3
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.8e-10 69.7 45 71.1
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 1.8e-10 69.7 45 71.1
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 3.0e-10 68.9 38 81.6
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 3.0e-10 68.9 38 81.6
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 3.0e-10 68.9 38 81.6
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 3.0e-10 68.9 38 81.6
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 3.0e-10 68.9 38 81.6
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 3.0e-10 68.9 38 81.6
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 3.0e-10 68.9 38 81.6
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 3.0e-10 68.9 38 81.6
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 3.0e-10 68.9 38 81.6
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 3.0e-10 68.9 38 81.6
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 3.0e-10 68.9 38 81.6
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 3.0e-10 68.9 38 81.6
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 3.0e-10 68.9 38 81.6
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 3.0e-10 68.9 38 81.6
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 3.0e-10 68.9 45 73.3
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 4.0e-10 68.6 45 71.1
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 6.8e-10 67.8 38 78.9
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 6.8e-10 67.8 38 76.3
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 8.8e-10 67.4 38 78.9
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 1.2e-09 67.0 39 79.5
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 3.7e-08 62.0 39 69.2
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 7.0e-07 57.8 39 64.1
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 7.0e-07 57.8 38 68.4
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 7.0e-07 57.8 38 68.4
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 1.6e-06 56.6 37 73.0
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 2.0e-06 56.2 45 53.3
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 2.7e-06 55.8 73 45.2
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 3.5e-06 55.5 63 49.2


User provided reference genes

Program Settings