Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 1.7e-69 265.8 125 100.0
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 5.6e-20 101.3 55 89.1
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 5.6e-12 74.7 62 62.9
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 4.7e-11 71.6 56 67.9
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 1.1e-10 70.5 53 67.9
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.4e-10 70.1 55 67.3
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.4e-10 70.1 55 67.3
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 4.0e-10 68.6 61 60.7
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 4.0e-10 68.6 54 61.1
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 5.2e-10 68.2 55 63.6
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 5.2e-10 68.2 63 60.3
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 8.9e-10 67.4 53 64.2
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 1.2e-09 67.0 54 64.8
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 1.5e-09 66.6 63 58.7
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 2.6e-09 65.9 54 64.8
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 2.6e-09 65.9 52 63.5
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 2.6e-09 65.9 65 56.9
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 3.4e-09 65.5 53 58.5
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 3.4e-09 65.5 53 64.2
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 5.8e-09 64.7 52 61.5
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 5.8e-09 64.7 55 61.8
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 5.8e-09 64.7 62 58.1
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 5.8e-09 64.7 54 57.4
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 7.5e-09 64.3 52 59.6
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 7.5e-09 64.3 52 59.6
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 7.5e-09 64.3 53 58.5
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 7.5e-09 64.3 53 58.5
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 7.5e-09 64.3 53 58.5
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 7.5e-09 64.3 53 62.3
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 9.9e-09 63.9 54 66.7
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 9.9e-09 63.9 53 60.4
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 1.3e-08 63.5 52 59.6
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 1.3e-08 63.5 55 61.8
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 1.7e-08 63.2 52 57.7
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 1.7e-08 63.2 54 57.4
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 1.7e-08 63.2 53 66.0
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.7e-08 63.2 63 52.4
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 2.2e-08 62.8 62 53.2
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 2.2e-08 62.8 49 65.3
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 2.2e-08 62.8 37 73.0
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 2.9e-08 62.4 62 53.2
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 2.9e-08 62.4 53 56.6
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 2.9e-08 62.4 53 56.6
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 2.9e-08 62.4 60 56.7
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 3.7e-08 62.0 62 51.6
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 4.9e-08 61.6 55 60.0
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 4.9e-08 61.6 60 58.3
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 4.9e-08 61.6 44 65.9
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 6.4e-08 61.2 59 55.9
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 6.4e-08 61.2 59 57.6
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 8.3e-08 60.8 59 57.6
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 1.1e-07 60.5 62 50.0
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 1.1e-07 60.5 59 55.9
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.1e-07 60.5 52 57.7
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 1.1e-07 60.5 54 55.6
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 1.1e-07 60.5 54 55.6
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 1.4e-07 60.1 36 72.2
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 1.4e-07 60.1 54 61.1
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 1.4e-07 60.1 59 57.6
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 1.4e-07 60.1 62 53.2
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 1.4e-07 60.1 52 55.8
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 1.4e-07 60.1 52 55.8
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 1.9e-07 59.7 59 55.9
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 1.9e-07 59.7 60 56.7
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 1.9e-07 59.7 53 56.6
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 2.4e-07 59.3 64 50.0
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 3.2e-07 58.9 58 56.9
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 3.2e-07 58.9 52 55.8
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 4.1e-07 58.5 52 55.8
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 9.2e-07 57.4 53 52.8
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 9.2e-07 57.4 44 56.8
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 9.2e-07 57.4 62 46.8
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 9.2e-07 57.4 54 55.6
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 1.2e-06 57.0 52 55.8
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 1.2e-06 57.0 53 56.6
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 1.6e-06 56.6 53 50.9
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 1.6e-06 56.6 62 48.4
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 1.6e-06 56.6 52 57.7
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 1.6e-06 56.6 52 53.8
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 1.6e-06 56.6 52 53.8
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 1.6e-06 56.6 52 55.8
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 1.6e-06 56.6 41 65.9
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 2.1e-06 56.2 51 56.9
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 2.7e-06 55.8 41 63.4
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 4.6e-06 55.1 52 55.8
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 4.6e-06 55.1 53 54.7
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 6.0e-06 54.7 33 69.7
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 6.0e-06 54.7 33 69.7
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 7.8e-06 54.3 52 51.9
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 7.8e-06 54.3 38 63.2
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 7.8e-06 54.3 53 52.8


User provided reference genes

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