Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0519931 Helianthus annuus HOM05D011081 ORTHO05D000592 1.9e-56 222.2 107 100.0
HanXRQChr14g0441961 Helianthus annuus HOM05D000539 ORTHO05D000592 5.4e-56 220.7 107 99.1
HanXRQChr09g0262931 Helianthus annuus HOM05D000539 ORTHO05D000592 2.7e-55 218.4 107 98.1
HanXRQChr10g0317561 Helianthus annuus HOM05D000539 ORTHO05D000592 2.7e-55 218.4 107 98.1
HanXRQChr09g0261101 Helianthus annuus HOM05D000539 ORTHO05D000592 2.0e-34 149.1 76 90.8
Lsat_1_v5_gn_4_34001 Lactuca sativa HOM05D000539 ORTHO05D000592 2.1e-28 129.0 114 54.4
ECA240G4466 Erigeron canadensis HOM05D000539 ORTHO05D000233 3.6e-28 128.3 101 58.4
Lsat_1_v5_gn_4_12061 Lactuca sativa HOM05D000539 ORTHO05D000592 3.1e-27 125.2 101 57.4
Lsat_1_v5_gn_2_7701 Lactuca sativa HOM05D000539 ORTHO05D000592 1.5e-26 122.9 110 53.6
ECA236G3736 Erigeron canadensis HOM05D000539 ORTHO05D000233 1.7e-25 119.4 113 50.4
ECA246G5051 Erigeron canadensis HOM05D000107 ORTHO05D000062 4.6e-23 111.3 114 46.5
HanXRQChr16g0515391 Helianthus annuus HOM05D000539 ORTHO05D000592 1.1e-21 106.7 88 65.9
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 7.4e-21 104.0 84 57.1
ECA232G3917 Erigeron canadensis HOM05D000107 ORTHO05D000062 9.6e-21 103.6 101 49.5
Lsat_1_v5_gn_5_85761 Lactuca sativa HOM05D011081 ORTHO05D000592 4.8e-20 101.3 90 53.3
ECA240G0180 Erigeron canadensis HOM05D000539 ORTHO05D000233 8.1e-20 100.5 114 45.6
Lsat_1_v5_gn_2_58940 Lactuca sativa HOM05D000539 ORTHO05D000592 2.4e-19 99.0 84 56.0
HanXRQChr10g0286251 Helianthus annuus HOM05D011081 ORTHO05D000592 2.0e-18 95.9 86 52.3
Lsat_1_v5_gn_4_32420 Lactuca sativa HOM05D000539 ORTHO05D000592 9.9e-18 93.6 94 47.9
ECA232G2064 Erigeron canadensis HOM05D000539 ORTHO05D000592 6.4e-17 90.9 64 57.8
Lsat_1_v5_gn_7_70420 Lactuca sativa HOM05D000539 ORTHO05D000592 1.1e-16 90.1 108 45.4
Lsat_1_v5_gn_4_88020 Lactuca sativa HOM05D000539 ORTHO05D000592 1.9e-16 89.4 83 53.0
ECA246G2093 Erigeron canadensis HOM05D000107 ORTHO05D000062 2.3e-14 82.4 85 44.7
ECA247G3504 Erigeron canadensis HOM05D011081 ORTHO05D000592 5.1e-14 81.3 86 44.2
HanXRQChr03g0072891 Helianthus annuus HOM05D011081 ORTHO05D000592 5.6e-13 77.8 62 56.5
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 7.4e-13 77.4 98 39.8
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 7.4e-13 77.4 98 39.8
HanXRQChr17g0567791 Helianthus annuus HOM05D000750 ORTHO05D000592 9.6e-13 77.0 60 60.0
Lsat_1_v5_gn_2_32460 Lactuca sativa HOM05D000539 ORTHO05D000592 1.6e-12 76.3 84 47.6
RcHm_v2.0_Chr4g0390571 Rosa chinensis HOM05D000539 ORTHO05D000592 1.6e-12 76.3 98 39.8
HanXRQChr15g0465241 Helianthus annuus HOM05D000750 ORTHO05D000592 1.1e-11 73.6 60 58.3
HanXRQChr04g0104851 Helianthus annuus HOM05D011081 ORTHO05D000592 3.1e-11 72.0 59 55.9
HanXRQChr08g0229411 Helianthus annuus HOM05D011081 ORTHO05D000592 3.1e-11 72.0 90 41.1
RcHm_v2.0_Chr1g0318241 Rosa chinensis HOM05D000539 ORTHO05D000592 5.3e-11 71.2 98 37.8
Ca_23926_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.9e-11 70.9 105 32.4
HanXRQChr09g0267321 Helianthus annuus HOM05D011081 ORTHO05D011662 6.9e-11 70.9 60 55.0
HanXRQChr13g0398291 Helianthus annuus HOM05D011081 ORTHO05D000592 6.9e-11 70.9 42 69.0
Ca_03334_v3 Cicer arietinum L. HOM05D002644 ORTHO05D000592 9.0e-11 70.5 105 32.4
Ca_19281_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 4.5e-10 68.2 105 31.4
Ca_02759_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.3e-09 66.6 105 31.4
Ca_04791_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.3e-09 66.6 105 30.5
Ca_18593_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.3e-09 66.6 105 30.5
Ca_23902_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.3e-09 66.6 105 30.5
Ca_12950_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.2e-09 65.9 109 33.0
Ca_13592_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.2e-09 65.9 105 31.4
Ca_05353_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.8e-09 65.1 101 32.7
Rhsim02G0146100 Rhododendron simsii HOM05D000539 ORTHO05D000233 3.8e-09 65.1 93 34.4
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.8e-09 65.1 93 35.5
Rhsim01G0127800 Rhododendron simsii HOM05D000539 ORTHO05D000233 4.9e-09 64.7 93 41.9
Rhsim09G0096300 Rhododendron simsii HOM05D000539 ORTHO05D000233 4.9e-09 64.7 93 41.9
Atru.chr6.155 Acer truncatum HOM05D000539 ORTHO05D000592 8.4e-09 63.9 111 32.4
Atru.chr1.738 Acer truncatum HOM05D000539 ORTHO05D000592 1.1e-08 63.5 94 37.2
Ca_07064_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.4e-08 63.2 97 33.0
Ca_20463_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.9e-08 62.8 105 30.5
CsaV3_6G018870 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.9e-08 62.8 108 29.6
Ca_03880_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.5e-08 62.4 105 29.5
ECA236G0195 Erigeron canadensis HOM05D000047 ORTHO05D000044 2.5e-08 62.4 54 50.0
CsaV3_1G045370 Cucumis sativus L. HOM05D000539 ORTHO05D000592 4.2e-08 61.6 108 28.7
Rhsim01G0018900 Rhododendron simsii HOM05D000539 ORTHO05D000233 4.2e-08 61.6 94 36.2
Ca_02486_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 5.5e-08 61.2 78 37.2
Ca_19885_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 7.1e-08 60.8 105 30.5
HanXRQChr01g0029741 Helianthus annuus HOM05D011081 ORTHO05D000592 9.3e-08 60.5 49 55.1
HanXRQChr08g0213901 Helianthus annuus HOM05D011081 ORTHO05D000592 9.3e-08 60.5 49 55.1
RcHm_v2.0_Chr6g0261571 Rosa chinensis HOM05D000539 ORTHO05D000592 9.3e-08 60.5 93 37.6
Atru.chr1.522 Acer truncatum HOM05D000539 ORTHO05D000592 1.2e-07 60.1 98 37.8
Ca_12022_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.2e-07 60.1 105 28.6
Ca_05401_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.6e-07 59.7 78 37.2
Ciclev10012877m.g Citrus clementina HOM05D000539 ORTHO05D000592 2.1e-07 59.3 107 32.7
HanXRQChr07g0199831 Helianthus annuus HOM05D011081 ORTHO05D000592 2.1e-07 59.3 49 53.1
Sed0026544 Sechium edule HOM05D000539 ORTHO05D000592 2.1e-07 59.3 98 26.5
MELO3C034193.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.7e-07 58.9 87 31.0
Rhsim02G0154800 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.7e-07 58.9 87 41.4
Ca_23714_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.0e-07 57.8 94 30.9
MD01G1047900 Malus domestica HOM05D000539 ORTHO05D000592 7.9e-07 57.4 83 32.5
Rhsim08G0058500 Rhododendron simsii HOM05D000539 ORTHO05D000592 7.9e-07 57.4 99 34.3
Rhsim08G0058700 Rhododendron simsii HOM05D000539 ORTHO05D000592 7.9e-07 57.4 99 34.3
Sed0024905 Sechium edule HOM05D000539 ORTHO05D000592 7.9e-07 57.4 98 25.5
Ca_20176_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.0e-06 57.0 92 30.4
CsaV3_UNG238520 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.0e-06 57.0 83 31.3
RhsimUnG0164900 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.0e-06 57.0 87 40.2
SGA_v2.0_scaffold191G40501 Striga asiatica HOM05D002644 ORTHO05D003267 1.0e-06 57.0 108 31.5
Ca_04527_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.3e-06 56.6 73 30.1
MELO3C031470.2 Cucumis melo HOM05D005049 ORTHO05D006032 1.3e-06 56.6 73 35.6
RcHm_v2.0_Chr1g0355551 Rosa chinensis HOM05D000539 ORTHO05D000592 1.8e-06 56.2 115 27.8
Ca_11988_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.3e-06 55.8 78 34.6
MELO3C034611.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.3e-06 55.8 84 28.6
Atru.chr7.1246 Acer truncatum HOM05D000539 ORTHO05D000592 3.0e-06 55.5 59 40.7
AUR62026574 Chenopodium quinoa HOM05D002644 ORTHO05D000233 3.0e-06 55.5 70 37.1
MELO3C027923.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.0e-06 55.5 95 32.6
MELO3C035055.2 Cucumis melo HOM05D000004 ORTHO05D000002 3.0e-06 55.5 87 29.9
HanXRQChr14g0457831 Helianthus annuus HOM05D011081 ORTHO05D000592 3.0e-06 55.5 60 48.3
Medtr4g043785 Medicago truncatula HOM05D002644 ORTHO05D018018 3.0e-06 55.5 71 33.8
Ca_06535_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.9e-06 55.1 73 35.6
MELO3C029090.2 Cucumis melo HOM05D008781 ORTHO05D000592 3.9e-06 55.1 95 30.5
HanXRQChr03g0085581 Helianthus annuus HOM05D011081 ORTHO05D000592 3.9e-06 55.1 49 53.1
Lj2g0011920 Lotus japonicus HOM05D002644 ORTHO05D003267 3.9e-06 55.1 106 26.4
RcHm_v2.0_Chr5g0079561 Rosa chinensis HOM05D000539 ORTHO05D000592 3.9e-06 55.1 95 30.5
MELO3C033511.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.1e-06 54.7 88 30.7
Ca_27010_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.7e-06 54.3 53 41.5
MELO3C033862.2 Cucumis melo HOM05D000539 ORTHO05D000592 6.7e-06 54.3 105 30.5
Prupe.5G060800 Prunus persica HOM05D000539 ORTHO05D000592 6.7e-06 54.3 99 29.3
CANSAT35G0077 Cannabis sativa HOM05D000539 ORTHO05D000592 8.7e-06 53.9 97 33.0
CANSAT64G2767 Cannabis sativa HOM05D000539 ORTHO05D000592 8.7e-06 53.9 97 33.0
vmacro04479 Vaccinium macrocarpon HOM05D000539 ORTHO05D000233 8.7e-06 53.9 95 32.6


User provided reference genes

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