Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0519331 Helianthus annuus HOM05D000336 ORTHO05D018162 9.2e-44 179.9 93 100.0
HanXRQChr04g0096231 Helianthus annuus HOM05D000336 ORTHO05D000593 2.0e-38 162.2 92 92.4
HanXRQChr03g0084601 Helianthus annuus HOM05D000336 ORTHO05D000593 4.4e-38 161.0 92 91.3
HanXRQChr06g0174421 Helianthus annuus HOM05D000336 ORTHO05D018162 4.4e-38 161.0 83 98.8
HanXRQChr02g0049611 Helianthus annuus HOM05D000336 ORTHO05D000593 5.8e-38 160.6 93 91.4
HanXRQChr05g0148141 Helianthus annuus HOM05D000336 ORTHO05D000593 1.3e-37 159.5 92 91.3
HanXRQChr02g0045561 Helianthus annuus HOM05D000336 ORTHO05D000593 2.2e-37 158.7 92 90.2
HanXRQChr02g0037871 Helianthus annuus HOM05D000336 ORTHO05D000593 6.4e-37 157.1 91 90.1
HanXRQChr09g0248451 Helianthus annuus HOM05D000336 ORTHO05D000593 8.6e-34 146.7 82 93.9
HanXRQChr07g0192281 Helianthus annuus HOM05D000336 ORTHO05D018162 1.6e-32 142.5 93 83.9
HanXRQChr07g0206521 Helianthus annuus HOM05D000336 ORTHO05D000593 6.2e-32 140.6 92 83.7
HanXRQChr05g0128901 Helianthus annuus HOM05D000336 ORTHO05D000593 1.1e-31 139.8 73 95.9
HanXRQChr07g0190441 Helianthus annuus HOM05D000336 ORTHO05D000593 1.1e-31 139.8 73 95.9
HanXRQChr13g0414081 Helianthus annuus HOM05D000336 ORTHO05D000593 1.1e-31 139.8 73 95.9
HanXRQChr17g0567521 Helianthus annuus HOM05D000336 ORTHO05D000593 5.2e-31 137.5 73 93.2
HanXRQChr08g0219131 Helianthus annuus HOM05D000336 ORTHO05D018162 6.8e-31 137.1 93 82.8
HanXRQChr09g0247571 Helianthus annuus HOM05D000336 ORTHO05D000593 6.8e-31 137.1 97 81.4
Lsat_1_v5_gn_9_113801 Lactuca sativa HOM05D000336 ORTHO05D000593 1.9e-25 119.0 85 76.5
ECA240G0856 Erigeron canadensis HOM05D000336 ORTHO05D000593 9.5e-25 116.7 108 67.6
HanXRQChr03g0071061 Helianthus annuus HOM05D000336 ORTHO05D000593 1.4e-23 112.8 86 73.3
DCAR_001843 Daucus carota HOM05D000336 ORTHO05D000593 5.1e-18 94.4 96 60.4
DCAR_021896 Daucus carota HOM05D000336 ORTHO05D000593 8.6e-18 93.6 92 59.8
Dinv08966 Davidia involucrata HOM05D000336 ORTHO05D000593 1.9e-17 92.4 104 59.6
Dinv16034 Davidia involucrata HOM05D000336 ORTHO05D000593 2.5e-17 92.0 97 61.9
vmacro01901 Vaccinium macrocarpon HOM05D000336 ORTHO05D000593 2.1e-16 89.0 85 62.4
vmacro23359 Vaccinium macrocarpon HOM05D000336 ORTHO05D000593 2.1e-16 89.0 85 62.4
Actinidia02412 Actinidia chinensis HOM05D000336 ORTHO05D000593 3.6e-16 88.2 102 58.8
CSS0038549 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 1.1e-15 86.7 85 62.4
Haze_10394 Corylus avellana HOM05D000336 ORTHO05D000593 1.8e-15 85.9 80 62.5
Cfa004802 Carpinus fangiana HOM05D000336 ORTHO05D000593 2.4e-15 85.5 80 61.2
Cpa.g.c39174 Carica papaya HOM05D000336 ORTHO05D000593 1.2e-14 83.2 83 57.8
Duzib132G0652 Durio zibethinus HOM05D000336 ORTHO05D000593 1.5e-14 82.8 81 61.7
Gohir.A13G049400 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.5e-14 82.8 81 61.7
Gohir.D13G047900 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.5e-14 82.8 81 61.7
Gorai.013G053500 Gossypium raimondii HOM05D000336 ORTHO05D000593 1.5e-14 82.8 81 61.7
CsaV3_4G014650 Cucumis sativus L. HOM05D000336 ORTHO05D000593 2.0e-14 82.4 84 58.3
Thecc.02G124900 Theobroma cacao HOM05D000336 ORTHO05D000593 2.0e-14 82.4 82 61.0
CiPaw.05G026900 Carya illinoinensis HOM05D000336 ORTHO05D000593 2.6e-14 82.0 84 60.7
Gohir.D01G009700 Gossypium hirsutum HOM05D000336 ORTHO05D000593 3.4e-14 81.6 82 62.2
Gorai.002G011800 Gossypium raimondii HOM05D000336 ORTHO05D000593 3.4e-14 81.6 82 62.2
Gohir.A01G010100 Gossypium hirsutum HOM05D000336 ORTHO05D000593 4.4e-14 81.3 82 62.2
PGSC0003DMG400003108 Solanum tuberosum HOM05D000336 ORTHO05D000593 5.8e-14 80.9 98 50.0
GSVIVG01038522001 Vitis vinifera HOM05D000336 ORTHO05D000593 5.8e-14 80.9 85 54.1
arahy.Tifrunner.gnm1.ann1.GEB016 Arachis hypogaea HOM05D000336 ORTHO05D000593 7.6e-14 80.5 93 52.7
Cc02_g20580 Coffea canephora HOM05D000336 ORTHO05D000593 7.6e-14 80.5 89 53.9
MELO3C018043.2 Cucumis melo HOM05D000336 ORTHO05D000593 7.6e-14 80.5 83 57.8
Prupe.8G075200 Prunus persica HOM05D000336 ORTHO05D000593 7.6e-14 80.5 97 52.6
ClCG10G009770 Citrullus lanatus HOM05D000336 ORTHO05D000593 9.9e-14 80.1 83 56.6
Solyc01g106280.3 Solanum lycopersicum HOM05D000336 ORTHO05D000593 2.2e-13 79.0 97 50.5
Sed0024361 Sechium edule HOM05D000336 ORTHO05D000593 2.9e-13 78.6 98 51.0
FAN27G1881 Fragaria x ananassa HOM05D000336 ORTHO05D000593 4.9e-13 77.8 89 51.7
MD05G1049900 Malus domestica HOM05D000336 ORTHO05D000593 4.9e-13 77.8 93 52.7
Manes.10G093200 Manihot esculenta HOM05D000336 ORTHO05D000593 4.9e-13 77.8 86 53.5
arahy.Tifrunner.gnm1.ann1.303TEV Arachis hypogaea HOM05D000336 ORTHO05D000593 6.4e-13 77.4 93 51.6
FAN20G1434 Fragaria x ananassa HOM05D000336 ORTHO05D000593 6.4e-13 77.4 90 51.1
RcHm_v2.0_Chr6g0269471 Rosa chinensis HOM05D000336 ORTHO05D000593 6.4e-13 77.4 90 51.1
FvH4_2g11150 Fragaria vesca HOM05D000336 ORTHO05D000593 8.4e-13 77.0 91 50.5
Manes.10G094333 Manihot esculenta HOM05D000336 ORTHO05D000593 8.4e-13 77.0 85 54.1
QL11p026618 Quercus lobata HOM05D000336 ORTHO05D000593 8.4e-13 77.0 84 52.4
arahy.Tifrunner.gnm1.ann1.F46B23 Arachis hypogaea HOM05D000336 ORTHO05D000593 1.1e-12 76.6 95 49.5
Duzib248G0904 Durio zibethinus HOM05D000336 ORTHO05D000593 1.1e-12 76.6 79 58.2
Ciclev10028177m.g Citrus clementina HOM05D000336 ORTHO05D000593 1.4e-12 76.3 83 59.0
Duzib052G0642 Durio zibethinus HOM05D000336 ORTHO05D000593 1.4e-12 76.3 81 55.6
Glyma.15G060200 Glycine max HOM05D000336 ORTHO05D000593 1.4e-12 76.3 96 53.1
MD10G1057000 Malus domestica HOM05D000336 ORTHO05D000593 1.4e-12 76.3 93 51.6
Sopen01g048660 Solanum pennellii HOM05D000336 ORTHO05D000593 1.9e-12 75.9 98 46.9
TWI14G0475 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 1.9e-12 75.9 84 59.5
Potri.001G285700 Populus trichocarpa HOM05D000336 ORTHO05D000593 2.4e-12 75.5 89 52.8
Sabra09G0062000 Salix brachista HOM05D000336 ORTHO05D000593 2.4e-12 75.5 89 53.9
FAN24G2211 Fragaria x ananassa HOM05D000336 ORTHO05D000593 3.2e-12 75.1 90 50.0
Lj6g0016097 Lotus japonicus HOM05D000336 ORTHO05D000593 3.2e-12 75.1 98 53.1
Peaxi162Scf00016g03456 Petunia axillaris HOM05D000336 ORTHO05D000593 3.2e-12 75.1 93 48.4
arahy.Tifrunner.gnm1.ann1.JI061M Arachis hypogaea HOM05D000336 ORTHO05D000593 5.4e-12 74.3 95 48.4
FAN15G1559 Fragaria x ananassa HOM05D000336 ORTHO05D000593 5.4e-12 74.3 90 50.0
Potri.009G080000 Populus trichocarpa HOM05D000336 ORTHO05D000593 5.4e-12 74.3 89 51.7
Sed0007557 Sechium edule HOM05D000336 ORTHO05D000593 5.4e-12 74.3 103 45.6
Glyma.13G254500 Glycine max HOM05D000336 ORTHO05D000593 7.1e-12 73.9 97 50.5
Lalb_Chr15g0090261 Lupinus albus HOM05D000336 ORTHO05D000593 7.1e-12 73.9 89 53.9
Psat7g102800 Pisum sativum HOM05D000336 ORTHO05D000593 7.1e-12 73.9 91 52.7
Rhsim05G0096200 Rhododendron simsii HOM05D000336 ORTHO05D000593 7.1e-12 73.9 79 51.9
Ca_00182_v3 Cicer arietinum L. HOM05D000336 ORTHO05D000593 9.3e-12 73.6 92 52.2
Ca_17569_v3 Cicer arietinum L. HOM05D000336 ORTHO05D000593 9.3e-12 73.6 83 51.8
Ca_18413_v3 Cicer arietinum L. HOM05D000336 ORTHO05D000593 9.3e-12 73.6 83 51.8
Sabra16G0178100 Salix brachista HOM05D000336 ORTHO05D000593 9.3e-12 73.6 89 51.7
TAR376G0749 Trochodendron aralioides HOM05D000336 ORTHO05D000593 9.3e-12 73.6 96 51.0
CAN.G504.47 Capsicum annuum HOM05D000336 ORTHO05D000593 1.2e-11 73.2 92 46.7
Phvul.006G199400 Phaseolus vulgaris HOM05D000336 ORTHO05D000593 1.2e-11 73.2 91 52.7
Hund06480 Selenicereus undatus HOM05D000336 ORTHO05D000593 1.6e-11 72.8 83 51.8
Glyma.15G060300 Glycine max HOM05D000336 ORTHO05D000593 2.7e-11 72.0 95 49.5
TPR.G16870 Trifolium pratense HOM05D000336 ORTHO05D000593 2.7e-11 72.0 101 51.5
TPR.G16886 Trifolium pratense HOM05D000336 ORTHO05D000593 3.5e-11 71.6 94 50.0
Medtr4g092900 Medicago truncatula HOM05D000336 ORTHO05D000593 4.6e-11 71.2 84 50.0
TWI23G0192 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 4.6e-11 71.2 85 56.5
TWI59G0378 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 4.6e-11 71.2 85 56.5
ClCG09G016470 Citrullus lanatus HOM05D000336 ORTHO05D000593 6.0e-11 70.9 105 42.9
Medtr4g092880 Medicago truncatula HOM05D000336 ORTHO05D000593 6.0e-11 70.9 84 50.0
Phvul.006G199500 Phaseolus vulgaris HOM05D000336 ORTHO05D000593 1.0e-10 70.1 83 51.8
TAR625G1523 Trochodendron aralioides HOM05D000336 ORTHO05D000593 1.0e-10 70.1 82 53.7
VMungo0540G1758 Vigna mungo HOM05D000336 ORTHO05D000593 1.0e-10 70.1 83 53.0
vmacro19596 Vaccinium macrocarpon HOM05D000336 ORTHO05D000593 1.3e-10 69.7 95 44.2
MELO3C018560.2 Cucumis melo HOM05D000336 ORTHO05D000593 2.3e-10 68.9 86 48.8
CsaV3_7G007420 Cucumis sativus L. HOM05D000336 ORTHO05D000593 2.3e-10 68.9 86 46.5
Lalb_Chr16g0383081 Lupinus albus HOM05D000336 ORTHO05D000593 3.0e-10 68.6 105 47.6
THA.LOC104798515 Tarenaya hassleriana HOM05D000336 ORTHO05D000593 3.9e-10 68.2 79 48.1
AL6G21080 Arabidopsis lyrata HOM05D000336 ORTHO05D000593 1.1e-09 66.6 77 46.8
CANSAT54G0865 Cannabis sativa HOM05D000336 ORTHO05D000593 1.1e-09 66.6 100 44.0
CARHR202750 Cardamine hirsuta HOM05D000336 ORTHO05D000593 1.1e-09 66.6 77 46.8
Lalb_Chr18g0060291 Lupinus albus HOM05D000336 ORTHO05D000593 1.1e-09 66.6 83 53.0
Sp2g28720 Schrenkiella parvula HOM05D000336 ORTHO05D000593 1.1e-09 66.6 77 49.4
Aa31LG1G16430 Aethionema arabicum HOM05D000336 ORTHO05D000593 1.5e-09 66.2 76 48.7
EL10Ac9g22128 Beta vulgaris HOM05D000336 ORTHO05D000593 1.5e-09 66.2 84 45.2
Carub.0006s0903 Capsella rubella HOM05D000336 ORTHO05D000593 1.5e-09 66.2 77 46.8
THA.LOC104806093 Tarenaya hassleriana HOM05D000336 ORTHO05D000593 1.9e-09 65.9 78 50.0
AT5G10550 Arabidopsis thaliana HOM05D000336 ORTHO05D000593 2.5e-09 65.5 77 45.5
Nitab4.5_0005163g0070 Nicotiana tabacum HOM05D000336 ORTHO05D000593 2.5e-09 65.5 103 43.7
Sc18g0007180 Simmondsia chinensis HOM05D000336 ORTHO05D000593 2.5e-09 65.5 77 50.6
Ah.01g024180 Amaranthus hybridus HOM05D000336 ORTHO05D000593 3.3e-09 65.1 81 50.6
Thhalv10003870m.g Eutrema salsugineum HOM05D000336 ORTHO05D000593 3.3e-09 65.1 77 48.1
PGR031G2905 Punica granatum HOM05D000336 ORTHO05D000593 3.3e-09 65.1 85 47.1
Aa31LG3G16520 Aethionema arabicum HOM05D000336 ORTHO05D000593 4.3e-09 64.7 77 48.1
ATR0800G076 Amborella trichopoda HOM05D000336 ORTHO05D000593 4.3e-09 64.7 92 47.8
BcaC01g02850 Brassica carinata HOM05D000336 ORTHO05D000593 4.3e-09 64.7 79 46.8
A06p32470 Brassica napus HOM05D000336 ORTHO05D000593 4.3e-09 64.7 79 45.6
BraA06t26171Z Brassica rapa HOM05D000336 ORTHO05D000593 4.3e-09 64.7 79 45.6
CSS0017677 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 4.3e-09 64.7 94 44.7
CSS0048144 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 4.3e-09 64.7 94 44.7
Eucgr.I00604 Eucalyptus grandis HOM05D000336 ORTHO05D000593 4.3e-09 64.7 81 49.4
C03p60120 Brassica napus HOM05D000336 ORTHO05D000593 5.6e-09 64.3 79 46.8
BolC3t18276H Brassica oleracea HOM05D000336 ORTHO05D000593 5.6e-09 64.3 79 46.8
SGA_v2.0_scaffold83G26395 Striga asiatica HOM05D000336 ORTHO05D000593 5.6e-09 64.3 90 45.6
AL8G43220 Arabidopsis lyrata HOM05D000336 ORTHO05D000593 7.3e-09 63.9 76 46.1
AT5G65630 Arabidopsis thaliana HOM05D000336 ORTHO05D000593 7.3e-09 63.9 76 46.1
BcaB01g05520 Brassica carinata HOM05D000336 ORTHO05D000593 7.3e-09 63.9 77 44.2
A03p04650 Brassica napus HOM05D000336 ORTHO05D000593 7.3e-09 63.9 77 44.2
C03p05330 Brassica napus HOM05D000336 ORTHO05D000593 7.3e-09 63.9 77 44.2
BolC3t13046H Brassica oleracea HOM05D000336 ORTHO05D000593 7.3e-09 63.9 77 44.2
BraA03t09806Z Brassica rapa HOM05D000336 ORTHO05D000593 7.3e-09 63.9 77 44.2
Ah.01g007250 Amaranthus hybridus HOM05D000336 ORTHO05D000593 9.6e-09 63.5 88 48.9
TAR381G0068 Trochodendron aralioides HOM05D000336 ORTHO05D000593 9.6e-09 63.5 97 47.4
TAR381G1197 Trochodendron aralioides HOM05D000336 ORTHO05D000593 9.6e-09 63.5 97 47.4
Carub.0008s2650 Capsella rubella HOM05D000336 ORTHO05D000593 1.3e-08 63.2 77 46.8
CDE07G0195 Ceratophyllum demersum HOM05D000336 ORTHO05D000593 1.3e-08 63.2 75 52.0
Thhalv10012974m.g Eutrema salsugineum HOM05D000336 ORTHO05D000593 1.3e-08 63.2 75 50.7
Sp6g32880 Schrenkiella parvula HOM05D000336 ORTHO05D000593 1.3e-08 63.2 78 43.6
Lj4g0007650 Lotus japonicus HOM05D000336 ORTHO05D000593 1.6e-08 62.8 120 40.8
CiPaw.07G042300 Carya illinoinensis HOM05D000336 ORTHO05D000593 3.6e-08 61.6 85 44.7
CDE04G1675 Ceratophyllum demersum HOM05D000336 ORTHO05D000593 3.6e-08 61.6 79 46.8
Cc07_g07840 Coffea canephora HOM05D000336 ORTHO05D000593 3.6e-08 61.6 88 43.2
CDE04G0618 Ceratophyllum demersum HOM05D000336 ORTHO05D000593 4.8e-08 61.2 78 50.0
CANSAT01G2796 Cannabis sativa HOM05D000336 ORTHO05D000593 6.2e-08 60.8 85 43.5
Peaxi162Scf00703g00025 Petunia axillaris HOM05D000336 ORTHO05D000593 6.2e-08 60.8 79 49.4
Haze_03933 Corylus avellana HOM05D000336 ORTHO05D000593 8.1e-08 60.5 89 44.9
unitig_0.g891 Utricularia gibba HOM05D000336 ORTHO05D000593 8.1e-08 60.5 97 43.3
Nn1g05678 Nelumbo nucifera HOM05D000336 ORTHO05D000593 1.1e-07 60.1 91 41.8
HPP92_004724 Vanilla planifolia HOM05D000336 ORTHO05D000593 1.4e-07 59.7 92 40.2
CDE06G0426 Ceratophyllum demersum HOM05D000336 ORTHO05D000593 1.8e-07 59.3 79 46.8
SHI12182 Sapria himalayana HOM05D000336 ORTHO05D000593 1.8e-07 59.3 70 50.0
Actinidia22783 Actinidia chinensis HOM05D000336 ORTHO05D000593 2.4e-07 58.9 83 47.0
Dinv09092 Davidia involucrata HOM05D000336 ORTHO05D018162 2.4e-07 58.9 91 50.5
Dinv12577 Davidia involucrata HOM05D000336 ORTHO05D018162 2.4e-07 58.9 91 50.5
Nitab4.5_0002335g0020 Nicotiana tabacum HOM05D000336 ORTHO05D000593 2.4e-07 58.9 93 40.9
Actinidia16398 Actinidia chinensis HOM05D000336 ORTHO05D000593 3.1e-07 58.5 90 42.2
PSO541G1010 Papaver somniferum HOM05D000336 ORTHO05D000593 4.0e-07 58.2 107 37.4
AUR62027079 Chenopodium quinoa HOM05D000336 ORTHO05D000593 6.9e-07 57.4 77 48.1
PSO356G0008 Papaver somniferum HOM05D000336 ORTHO05D000593 6.9e-07 57.4 95 38.9
Nitab4.5_0002135g0040 Nicotiana tabacum HOM05D000336 ORTHO05D000593 1.2e-06 56.6 78 43.6
Oeu028715.1 Olea europaea HOM05D000336 ORTHO05D000593 1.5e-06 56.2 97 42.3
vmacro18036 Vaccinium macrocarpon HOM05D000336 ORTHO05D000593 1.5e-06 56.2 75 45.3
MSTRG.5295 Avicennia marina HOM05D000336 ORTHO05D000593 2.6e-06 55.5 27 88.9
Oeu059889.1 Olea europaea HOM05D000336 ORTHO05D000593 2.6e-06 55.5 27 85.2
MSTRG.20253 Avicennia marina HOM05D000336 ORTHO05D000593 4.4e-06 54.7 27 85.2
Nitab4.5_0000291g0050 Nicotiana tabacum HOM05D000336 ORTHO05D000593 4.4e-06 54.7 78 43.6
Oeu010513.1 Olea europaea HOM05D000336 ORTHO05D000593 4.4e-06 54.7 27 85.2
Oeu033794.2 Olea europaea HOM05D000336 ORTHO05D000593 4.4e-06 54.7 27 85.2
Atru.chr6.1355 Acer truncatum HOM05D000336 ORTHO05D018162 5.8e-06 54.3 71 49.3
SEGI_22030 Sequoiadendron giganteum HOM05D000336 ORTHO05D000593 7.6e-06 53.9 87 42.5
SEGI_22216 Sequoiadendron giganteum HOM05D000336 ORTHO05D000593 7.6e-06 53.9 81 45.7
Migut.B00521 Erythranthe guttata HOM05D000336 ORTHO05D000593 9.9e-06 53.5 66 45.5
Hma1.2p1_0080F.1_g042120 Hydrangea macrophylla HOM05D000336 ORTHO05D000593 9.9e-06 53.5 91 41.8
SalBow6G0279 Salvia bowleyana HOM05D000336 ORTHO05D000593 9.9e-06 53.5 27 85.2


User provided reference genes

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