Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 2.6e-75 285.4 158 100.0
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 1.1e-49 200.3 159 74.8
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 3.0e-47 192.2 131 79.4
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 2.5e-41 172.6 158 60.1
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 5.2e-39 164.9 160 60.0
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 8.8e-39 164.1 159 62.3
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 8.8e-39 164.1 159 62.3
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 3.4e-38 162.2 160 61.2
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 8.3e-37 157.5 159 58.5
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 4.1e-36 155.2 159 57.9
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.6e-35 153.3 158 55.7
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 2.0e-35 152.9 159 56.6
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 4.5e-35 151.8 158 55.7
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 1.0e-34 150.6 158 54.4
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 1.0e-34 150.6 158 58.9
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 1.3e-34 150.2 159 57.2
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 2.3e-34 149.4 158 58.2
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 3.8e-34 148.7 150 58.7
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 1.5e-33 146.7 159 57.2
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 1.5e-33 146.7 145 59.3
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 2.5e-33 146.0 158 58.2
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 2.5e-33 146.0 158 53.2
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 5.6e-33 144.8 152 55.3
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 7.3e-33 144.4 157 56.1
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.2e-32 143.7 128 60.9
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 1.2e-32 143.7 158 54.4
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.6e-32 143.3 128 60.9
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 3.6e-32 142.1 128 60.2
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 4.7e-32 141.7 158 57.0
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 1.4e-31 140.2 158 57.0
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 2.3e-31 139.4 128 60.2
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 3.0e-31 139.0 199 48.2
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 4.0e-31 138.7 143 56.6
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 4.0e-31 138.7 157 54.1
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 4.0e-31 138.7 157 54.8
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 5.2e-31 138.3 129 59.7
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 8.9e-31 137.5 159 54.7
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.5e-30 136.7 159 54.1
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.5e-30 136.7 159 54.1
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 2.6e-30 136.0 157 53.5
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 3.4e-30 135.6 158 54.4
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 4.4e-30 135.2 159 56.6
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 2.2e-29 132.9 157 54.8
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 3.7e-29 132.1 159 53.5
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 1.1e-28 130.6 152 53.9
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 2.4e-28 129.4 158 50.6
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 3.2e-28 129.0 157 52.9
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 7.0e-28 127.9 162 51.2
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 1.6e-27 126.7 162 50.6
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 1.6e-27 126.7 158 51.3
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 2.7e-27 125.9 129 57.4
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 2.7e-27 125.9 159 51.6
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 3.5e-27 125.6 134 53.0
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 4.6e-27 125.2 159 53.5
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 5.9e-27 124.8 159 54.1
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 1.7e-26 123.2 157 50.3
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 2.3e-26 122.9 169 45.0
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 2.3e-26 122.9 136 54.4
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 3.9e-26 122.1 161 50.3
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 3.9e-26 122.1 164 49.4
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 5.0e-26 121.7 157 48.4
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 6.6e-26 121.3 133 57.9
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 6.6e-26 121.3 187 43.3
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 1.5e-25 120.2 157 51.0
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 1.5e-25 120.2 158 51.3
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 1.2e-24 117.1 158 48.7
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 2.1e-24 116.3 157 50.3
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 2.8e-24 115.9 154 47.4
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 4.7e-24 115.2 154 47.4
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 4.7e-24 115.2 154 47.4
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 4.7e-24 115.2 166 48.8
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 6.2e-24 114.8 154 47.4
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 8.0e-24 114.4 154 47.4
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 1.0e-23 114.0 154 47.4
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 1.0e-23 114.0 145 49.7
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 1.0e-23 114.0 145 49.7
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 1.8e-23 113.2 150 46.7
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 3.1e-23 112.5 159 46.5
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 4.0e-23 112.1 153 47.7
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 1.2e-22 110.5 118 53.4
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 2.0e-22 109.8 100 62.0
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 3.4e-22 109.0 126 50.8
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 5.8e-22 108.2 134 55.2
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 9.8e-22 107.5 142 47.2
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 1.3e-21 107.1 130 49.2
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 2.2e-21 106.3 130 51.5
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 4.9e-21 105.1 147 51.0
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 1.9e-20 103.2 137 50.4
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 1.9e-20 103.2 141 53.2
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 3.2e-20 102.4 100 62.0
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 4.1e-20 102.1 148 45.3
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 5.4e-20 101.7 114 56.1
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 9.2e-20 100.9 167 41.9
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 1.2e-19 100.5 151 45.0
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 2.0e-19 99.8 117 52.1
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 2.7e-19 99.4 131 46.6
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 1.0e-18 97.4 108 55.6
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 3.0e-18 95.9 156 42.3
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 8.6e-18 94.4 131 45.8
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 2.5e-17 92.8 108 51.9
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 9.5e-17 90.9 158 37.3
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 9.5e-17 90.9 158 37.3
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 4.7e-16 88.6 137 43.1
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 8.9e-15 84.3 75 65.3
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 7.5e-14 81.3 128 45.3
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 1.3e-13 80.5 91 50.5
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 2.9e-13 79.3 173 38.2
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 3.7e-13 79.0 118 44.9
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 6.4e-13 78.2 111 42.3
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 6.4e-13 78.2 116 44.0
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 1.4e-12 77.0 118 47.5
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 1.9e-12 76.6 113 46.0
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 3.2e-12 75.9 85 50.6
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 5.4e-12 75.1 76 50.0
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 7.1e-12 74.7 74 51.4
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 2.1e-11 73.2 110 46.4
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 3.5e-11 72.4 78 50.0
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 4.6e-11 72.0 100 45.0
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 1.3e-10 70.5 108 40.7
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 2.3e-10 69.7 83 50.6
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 6.6e-10 68.2 84 48.8
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 6.6e-10 68.2 123 42.3
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 8.6e-10 67.8 56 55.4
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 3.3e-09 65.9 128 39.1
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 4.3e-09 65.5 100 44.0
Pp3c21_2370 Physcomitrium patens HOM05D005827 ORTHO05D005864 5.6e-09 65.1 129 41.9
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 1.6e-08 63.5 101 44.6
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 2.1e-08 63.2 119 38.7
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 2.1e-08 63.2 118 41.5
Ah.01g018070 Amaranthus hybridus HOM05D007150 ORTHO05D008994 2.0e-06 56.6 72 51.4
ClCG01G025500 Citrullus lanatus HOM05D005827 ORTHO05D005864 3.4e-06 55.8 134 34.3
AagrBONN_evm.TU.Sc2ySwM_228.4380 Anthoceros agrestis HOM05D005827 ORTHO05D005864 4.4e-06 55.5 94 44.7


User provided reference genes

Program Settings