Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 5.4e-62 240.7 114 100.0
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 5.0e-44 181.0 108 79.6
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 2.1e-42 175.6 109 73.4
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 2.1e-42 175.6 114 71.9
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 7.3e-27 124.0 115 55.7
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.1e-19 100.1 111 50.5
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 9.0e-17 90.5 111 49.5
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 1.5e-16 89.7 53 69.8
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 1.0e-12 77.0 107 42.1
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 1.3e-12 76.6 46 67.4
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 1.3e-12 76.6 46 67.4
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 2.3e-12 75.9 63 55.6
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 2.3e-12 75.9 46 67.4
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 3.0e-12 75.5 112 42.0
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 3.9e-12 75.1 46 65.2
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 5.1e-12 74.7 46 63.0
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 5.1e-12 74.7 43 67.4
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 5.1e-12 74.7 55 58.2
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 6.7e-12 74.3 55 56.4
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 8.7e-12 73.9 55 54.5
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 1.5e-11 73.2 67 44.8
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 2.5e-11 72.4 59 50.8
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 3.3e-11 72.0 41 68.3
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 5.6e-11 71.2 107 38.3
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 7.4e-11 70.9 107 39.3
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 7.4e-11 70.9 107 38.3
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 7.4e-11 70.9 67 49.3
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 9.6e-11 70.5 79 44.3
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 9.6e-11 70.5 39 69.2
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 9.6e-11 70.5 84 40.5
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 1.6e-10 69.7 50 56.0
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 2.8e-10 68.9 67 46.3
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 2.8e-10 68.9 85 42.4
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 2.8e-10 68.9 48 60.4
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 2.8e-10 68.9 46 58.7
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 2.8e-10 68.9 51 56.9
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 2.8e-10 68.9 44 61.4
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 3.6e-10 68.6 48 60.4
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 3.6e-10 68.6 44 54.5
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 3.6e-10 68.6 98 36.7
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 4.8e-10 68.2 54 55.6
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 6.2e-10 67.8 43 60.5
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 6.2e-10 67.8 38 60.5
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 6.2e-10 67.8 60 46.7
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.1e-09 67.0 63 49.2
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 1.4e-09 66.6 48 56.2
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 1.4e-09 66.6 111 41.4
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 1.4e-09 66.6 39 66.7
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 1.4e-09 66.6 107 38.3
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 1.4e-09 66.6 63 47.6
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 3.1e-09 65.5 41 56.1
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 3.1e-09 65.5 104 42.3
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 5.3e-09 64.7 107 41.1
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 5.3e-09 64.7 53 49.1
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 6.9e-09 64.3 95 37.9
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 9.0e-09 63.9 45 55.6
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 9.0e-09 63.9 46 50.0
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 9.0e-09 63.9 56 50.0
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 9.0e-09 63.9 56 50.0
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 9.0e-09 63.9 78 43.6
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 1.2e-08 63.5 46 56.5
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.2e-08 63.5 81 39.5
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 1.2e-08 63.5 79 44.3
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.2e-08 63.5 51 47.1
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 1.2e-08 63.5 69 43.5
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 1.2e-08 63.5 56 46.4
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 1.5e-08 63.2 43 58.1
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 2.0e-08 62.8 54 46.3
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 2.0e-08 62.8 78 41.0
Aqoxy6G02750 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 2.6e-08 62.4 53 50.9
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 2.6e-08 62.4 107 35.5
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 3.4e-08 62.0 44 56.8
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 3.4e-08 62.0 43 60.5
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 3.4e-08 62.0 107 34.6
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 3.4e-08 62.0 79 40.5
Duzib235G0354 Durio zibethinus HOM05D008232 ORTHO05D010390 3.4e-08 62.0 57 50.9
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 3.4e-08 62.0 50 50.0
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 3.4e-08 62.0 52 51.9
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 3.4e-08 62.0 107 38.3
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 4.5e-08 61.6 108 37.0
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 7.6e-08 60.8 64 40.6
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 7.6e-08 60.8 39 61.5
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 7.6e-08 60.8 39 61.5
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 9.9e-08 60.5 107 38.3
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 9.9e-08 60.5 107 38.3
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 9.9e-08 60.5 62 51.6
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 1.3e-07 60.1 64 50.0
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 1.3e-07 60.1 64 50.0
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 1.3e-07 60.1 64 50.0
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 1.3e-07 60.1 64 50.0
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 1.3e-07 60.1 42 61.9
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 1.3e-07 60.1 42 61.9
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 1.7e-07 59.7 64 50.0
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 1.7e-07 59.7 64 50.0
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 1.7e-07 59.7 49 55.1
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 1.7e-07 59.7 108 38.0
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.7e-07 59.7 45 53.3
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 2.2e-07 59.3 64 48.4
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 2.2e-07 59.3 45 53.3
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 2.2e-07 59.3 64 39.1
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 2.2e-07 59.3 39 61.5
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 2.2e-07 59.3 41 58.5
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 2.9e-07 58.9 48 56.2
Gohir.A05G117900 Gossypium hirsutum HOM05D008232 ORTHO05D010390 2.9e-07 58.9 56 50.0
Manes.06G016400 Manihot esculenta HOM05D008232 ORTHO05D010390 2.9e-07 58.9 98 33.7
Thecc.06G043900 Theobroma cacao HOM05D000051 ORTHO05D000015 2.9e-07 58.9 55 50.9
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 3.8e-07 58.5 65 46.2
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 3.8e-07 58.5 72 43.1
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 4.9e-07 58.2 107 37.4
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 4.9e-07 58.2 107 37.4
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 4.9e-07 58.2 95 35.8
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 4.9e-07 58.2 45 51.1
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 6.4e-07 57.8 39 59.0
Gorai.009G122800 Gossypium raimondii HOM05D008232 ORTHO05D010390 8.4e-07 57.4 46 56.5
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 8.4e-07 57.4 68 41.2
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 1.1e-06 57.0 107 37.4
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 1.4e-06 56.6 108 34.3
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 1.4e-06 56.6 41 58.5
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.4e-06 56.6 107 35.5
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 1.9e-06 56.2 109 34.9
Gohir.D05G118800 Gossypium hirsutum HOM05D008232 ORTHO05D010390 1.9e-06 56.2 46 54.3
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.9e-06 56.2 62 43.5
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 1.9e-06 56.2 84 36.9
COL.COLO4_26749 Corchorus olitorius HOM05D008232 ORTHO05D010390 3.2e-06 55.5 55 45.5
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 4.2e-06 55.1 101 35.6
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 4.2e-06 55.1 107 36.4
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 5.5e-06 54.7 107 33.6
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 5.5e-06 54.7 52 50.0
Ciclev10026814m.g Citrus clementina HOM05D008232 ORTHO05D010390 5.5e-06 54.7 95 41.1
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 5.5e-06 54.7 88 38.6
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 9.3e-06 53.9 108 34.3
Nitab4.5_0004890g0010 Nicotiana tabacum HOM05D008232 ORTHO05D010390 9.3e-06 53.9 51 45.1


User provided reference genes

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