Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0509731 Helianthus annuus HOM05D006479 ORTHO05D008310 9.7e-311 1069.3 545 100.0
ECA236G3846 Erigeron canadensis HOM05D006479 ORTHO05D008310 5.1e-251 870.9 549 79.4
Lsat_1_v5_gn_8_104041 Lactuca sativa HOM05D006479 ORTHO05D008310 5.5e-205 718.0 566 64.8
Gohir.A05G075300 Gossypium hirsutum HOM05D006479 ORTHO05D008310 5.9e-191 671.4 551 60.8
Hma1.2p1_0218F.1_g092540 Hydrangea macrophylla HOM05D006479 ORTHO05D008310 5.9e-191 671.4 574 63.9
Gorai.009G079600 Gossypium raimondii HOM05D006479 ORTHO05D008310 8.5e-190 667.5 551 60.8
CSS0011125 Camellia sinensis var. sinensis HOM05D006479 ORTHO05D008310 5.5e-189 664.8 538 66.7
CSS0016000 Camellia sinensis var. sinensis HOM05D006479 ORTHO05D008310 5.5e-189 664.8 538 66.7
Gohir.D05G078100 Gossypium hirsutum HOM05D006479 ORTHO05D008310 1.2e-188 663.7 551 60.4
MSTRG.17656 Avicennia marina HOM05D006479 ORTHO05D008310 2.1e-188 662.9 558 59.7
Lj2C905T5 Lonicera japonica HOM05D006479 ORTHO05D008310 8.0e-188 661.0 559 60.1
Actinidia07016 Actinidia chinensis HOM05D006479 ORTHO05D008310 1.0e-187 660.6 493 65.1
DCAR_002128 Daucus carota HOM05D006479 ORTHO05D008310 1.0e-187 660.6 569 59.2
Cc01_g07460 Coffea canephora HOM05D006479 ORTHO05D008310 1.4e-187 660.2 569 60.3
Duzib168G1317 Durio zibethinus HOM05D006479 ORTHO05D008310 3.9e-187 658.7 551 60.1
CAN.G280.16 Capsicum annuum HOM05D006479 ORTHO05D008310 8.8e-187 657.5 491 65.8
PGSC0003DMG400027398 Solanum tuberosum HOM05D006479 ORTHO05D008310 3.3e-186 655.6 567 60.1
TAR633G1538 Trochodendron aralioides HOM05D006479 ORTHO05D008310 3.3e-186 655.6 486 64.6
COL.COLO4_25288 Corchorus olitorius HOM05D006479 ORTHO05D008310 5.7e-186 654.8 554 59.2
CANSAT54G0955 Cannabis sativa HOM05D006479 ORTHO05D008310 7.4e-186 654.4 535 62.6
Cpa.g.sc103.78 Carica papaya HOM05D006479 ORTHO05D008310 1.3e-185 653.7 560 58.9
Duzib150G0338 Durio zibethinus HOM05D006479 ORTHO05D008310 4.8e-185 651.7 552 59.2
Solyc11g072050.1 Solanum lycopersicum HOM05D006479 ORTHO05D008310 6.3e-185 651.4 490 64.7
Thecc.09G263400 Theobroma cacao HOM05D006479 ORTHO05D008310 1.1e-184 650.6 553 62.4
Manes.04G055500 Manihot esculenta HOM05D006479 ORTHO05D008310 1.4e-184 650.2 550 61.1
TWI31G0851 Tripterygium wilfordii HOM05D006479 ORTHO05D008310 1.4e-184 650.2 552 59.8
CiPaw.14G092100 Carya illinoinensis HOM05D006479 ORTHO05D008310 9.1e-184 647.5 487 64.7
Sopen11g029700 Solanum pennellii HOM05D006479 ORTHO05D008310 1.2e-183 647.1 490 64.3
Oeu025955.1 Olea europaea HOM05D006479 ORTHO05D008310 1.6e-183 646.7 557 58.2
Nitab4.5_0006265g0010 Nicotiana tabacum HOM05D006479 ORTHO05D008310 4.5e-183 645.2 553 59.9
QL01p020440 Quercus lobata HOM05D006479 ORTHO05D008310 8.5e-182 641.0 535 59.3
arahy.Tifrunner.gnm1.ann1.Y6PBB0 Arachis hypogaea HOM05D006479 ORTHO05D008310 1.0e-179 634.0 514 61.3
arahy.Tifrunner.gnm1.ann1.K8UYYD Arachis hypogaea HOM05D006479 ORTHO05D008310 2.3e-179 632.9 512 61.3
Ciclev10014249m.g Citrus clementina HOM05D006479 ORTHO05D008310 1.5e-178 630.2 546 59.3
Prupe.6G152700 Prunus persica HOM05D006479 ORTHO05D008310 2.0e-178 629.8 534 59.9
Migut.N02413 Erythranthe guttata HOM05D006479 ORTHO05D008310 2.6e-178 629.4 560 57.5
ClCG02G024250 Citrullus lanatus HOM05D006479 ORTHO05D008310 4.4e-178 628.6 565 61.4
Potri.009G157900 Populus trichocarpa HOM05D006479 ORTHO05D008310 5.7e-178 628.2 552 57.6
RcHm_v2.0_Chr5g0049781 Rosa chinensis HOM05D006479 ORTHO05D008310 7.5e-178 627.9 571 56.2
THA.LOC104810966 Tarenaya hassleriana HOM05D006479 ORTHO05D008310 7.5e-178 627.9 503 61.6
Sc21g0006530 Simmondsia chinensis HOM05D006479 ORTHO05D008310 9.7e-178 627.5 485 63.1
CsaV3_4G017380 Cucumis sativus L. HOM05D006479 ORTHO05D008310 2.8e-177 625.9 559 61.4
Oeu032070.1 Olea europaea HOM05D006479 ORTHO05D008310 3.7e-177 625.5 539 58.1
FAN25G2741 Fragaria x ananassa HOM05D006479 ORTHO05D008310 1.8e-176 623.2 561 57.0
Sabra09G0123500 Salix brachista HOM05D006479 ORTHO05D008310 4.1e-176 622.1 544 58.3
MELO3C014710.2 Cucumis melo HOM05D006479 ORTHO05D008310 7.0e-176 621.3 520 63.5
FvH4_3g27150 Fragaria vesca HOM05D006479 ORTHO05D008310 2.7e-175 619.4 561 57.0
FAN16G0753 Fragaria x ananassa HOM05D006479 ORTHO05D008310 2.7e-175 619.4 561 57.0
EL10Ac7g16227 Beta vulgaris HOM05D006479 ORTHO05D008310 3.5e-175 619.0 483 61.1
TWI79G0137 Tripterygium wilfordii HOM05D006479 ORTHO05D008310 3.5e-175 619.0 551 58.3
FAN11G0648 Fragaria x ananassa HOM05D006479 ORTHO05D008310 5.9e-175 618.2 561 56.7
LjContig00564g0006585 Lotus japonicus HOM05D006479 ORTHO05D008310 5.9e-175 618.2 504 59.9
MD00G1031900 Malus domestica HOM05D006479 ORTHO05D008310 3.8e-174 615.5 576 55.9
PGR119G2537 Punica granatum HOM05D006479 ORTHO05D008310 3.8e-174 615.5 490 61.2
Rhsim13G0200600 Rhododendron simsii HOM05D006479 ORTHO05D008310 1.1e-173 614.0 582 54.8
PGSC0003DMG400005946 Solanum tuberosum HOM05D006479 ORTHO05D008310 4.7e-172 608.6 485 62.3
Atru.chr3.2921 Acer truncatum HOM05D006479 ORTHO05D008310 6.1e-172 608.2 556 57.4
MD11G1180000 Malus domestica HOM05D006479 ORTHO05D008310 8.0e-172 607.8 574 55.7
Sopen06g030060 Solanum pennellii HOM05D006479 ORTHO05D008310 3.0e-171 605.9 553 56.6
Solyc06g073650.1 Solanum lycopersicum HOM05D006479 ORTHO05D008310 4.0e-171 605.5 553 56.6
AUR62001606 Chenopodium quinoa HOM05D006479 ORTHO05D008310 5.2e-171 605.1 484 59.3
TPR.G11782 Trifolium pratense HOM05D006479 ORTHO05D008310 6.8e-171 604.7 526 57.4
Ca_06149_v3 Cicer arietinum L. HOM05D006479 ORTHO05D008310 1.2e-170 604.0 527 56.7
Thhalv10016076m.g Eutrema salsugineum HOM05D006479 ORTHO05D008310 1.5e-170 603.6 565 56.5
AUR62020174 Chenopodium quinoa HOM05D006479 ORTHO05D008310 4.4e-170 602.1 489 58.5
Glyma.14G044300 Glycine max HOM05D006479 ORTHO05D008310 5.7e-170 601.7 533 56.3
VMungo0647G2395 Vigna mungo HOM05D006479 ORTHO05D008310 7.5e-170 601.3 483 59.6
Medtr5g087680 Medicago truncatula HOM05D006479 ORTHO05D008310 9.8e-170 600.9 540 54.8
Sp6g23500 Schrenkiella parvula HOM05D006479 ORTHO05D008310 1.7e-169 600.1 559 55.8
Psat2g023000 Pisum sativum HOM05D006479 ORTHO05D008310 3.7e-169 599.0 465 60.9
FAN21G3675 Fragaria x ananassa HOM05D006479 ORTHO05D008310 8.3e-169 597.8 510 59.0
AT5G21040 Arabidopsis thaliana HOM05D006479 ORTHO05D008310 3.1e-168 595.9 555 56.6
Glyma.02G273700 Glycine max HOM05D006479 ORTHO05D008310 2.7e-167 592.8 531 55.4
Lalb_Chr10g0105871 Lupinus albus HOM05D006479 ORTHO05D008310 5.9e-167 591.7 502 57.4
Eucgr.J00620 Eucalyptus grandis HOM05D006479 ORTHO05D008310 1.3e-166 590.5 541 55.1
BraA10t43981Z Brassica rapa HOM05D006479 ORTHO05D008310 1.7e-166 590.1 554 54.3
A10p19030 Brassica napus HOM05D006479 ORTHO05D008310 2.3e-166 589.7 554 54.5
Aa31LG1G13720 Aethionema arabicum HOM05D006479 ORTHO05D008310 3.8e-166 589.0 511 58.7
AL6G32590 Arabidopsis lyrata HOM05D006479 ORTHO05D008310 1.9e-165 586.6 494 59.3
BolC9t58367H Brassica oleracea HOM05D006479 ORTHO05D008310 1.9e-165 586.6 557 54.0
C09p55040 Brassica napus HOM05D006479 ORTHO05D008310 2.5e-165 586.3 557 54.0
Carub.0006s1934 Capsella rubella HOM05D006479 ORTHO05D008310 3.3e-165 585.9 548 56.0
Aqoxy1G00109 Aquilegia oxysepala HOM05D006479 ORTHO05D008310 6.1e-164 581.6 541 58.6
CARHR191830 Cardamine hirsuta HOM05D006479 ORTHO05D008310 4.4e-162 575.5 564 52.8
Ah.08g222720 Amaranthus hybridus HOM05D006479 ORTHO05D008310 2.8e-161 572.8 482 57.1
Migut.D00711 Erythranthe guttata HOM05D006479 ORTHO05D008310 3.7e-161 572.4 475 59.4
PSO384G3454 Papaver somniferum HOM05D006479 ORTHO05D008310 3.0e-150 536.2 491 55.4
Os04g0619700 Oryza sativa ssp. japonica HOM05D006479 ORTHO05D008310 1.5e-149 533.9 570 47.7
PSO339G5772 Papaver somniferum HOM05D006479 ORTHO05D008310 4.3e-149 532.3 491 55.0
SHI25344 Sapria himalayana HOM05D006479 ORTHO05D008310 1.2e-148 530.8 492 58.9
CDE02G1192 Ceratophyllum demersum HOM05D006479 ORTHO05D008310 6.8e-147 525.0 520 49.8
CDE08G0797 Ceratophyllum demersum HOM05D006479 ORTHO05D008310 6.4e-145 518.5 474 51.9
Zm00001eb431140 Zea mays HOM05D006479 ORTHO05D008310 4.7e-140 502.3 498 50.0
BcaC04g19499 Brassica carinata HOM05D006479 ORTHO05D008310 1.6e-135 487.3 556 48.6
GSVIVG01037436001 Vitis vinifera HOM05D006479 ORTHO05D008310 1.5e-133 480.7 360 69.2
MBI13_g00570_MAGBIO Magnolia biondii HOM05D006479 ORTHO05D008310 3.3e-133 479.6 410 58.3
SEGI_01115 Sequoiadendron giganteum HOM05D006479 ORTHO05D008310 9.5e-133 478.0 567 46.2
ATR0068G008 Amborella trichopoda HOM05D006479 ORTHO05D008310 2.1e-132 476.9 491 49.5
HPP92_021206 Vanilla planifolia HOM05D006479 ORTHO05D008310 1.4e-131 474.2 503 47.3
Nn3g20864 Nelumbo nucifera HOM05D006479 ORTHO05D008310 8.4e-129 464.9 378 60.8
Phvul.008G208228 Phaseolus vulgaris HOM05D006479 ORTHO05D008310 3.2e-128 463.0 402 57.7
TAR636G1386 Trochodendron aralioides HOM05D006479 ORTHO05D008310 6.2e-124 448.7 347 63.7
Cfa010250 Carpinus fangiana HOM05D006479 ORTHO05D008310 6.2e-116 422.2 471 48.6
FAN21G1997 Fragaria x ananassa HOM05D006479 ORTHO05D008310 9.6e-109 398.3 354 57.9
Pp3c4_8230 Physcomitrium patens HOM05D006479 ORTHO05D008310 7.6e-106 388.7 457 43.1
Mapoly0060s0027 Marchantia polymorpha HOM05D006479 ORTHO05D008310 9.9e-106 388.3 486 41.6
SEGI_34026 Sequoiadendron giganteum HOM05D006479 ORTHO05D008310 1.3e-105 387.9 503 42.1
Haze_23643 Corylus avellana HOM05D006479 ORTHO05D008310 6.5e-97 359.0 443 46.0
SMO358G0705 Selaginella moellendorffii HOM05D006479 ORTHO05D008310 5.1e-94 349.4 447 43.0
SGA_v2.0_scaffold16G07575 Striga asiatica HOM05D006479 ORTHO05D008310 8.5e-81 305.4 453 41.5
Nitab4.5_0008289g0040 Nicotiana tabacum HOM05D006479 ORTHO05D008310 2.2e-65 254.2 345 42.6
Nitab4.5_0000205g0010 Nicotiana tabacum HOM05D006479 ORTHO05D008310 1.4e-62 245.0 348 42.8
Peaxi162Scf00978g00216 Petunia axillaris HOM05D006479 ORTHO05D008310 4.4e-53 213.4 324 38.9
Sed0023099 Sechium edule HOM05D006479 ORTHO05D010107 2.0e-42 177.9 342 34.5
CAN.G65.211 Capsicum annuum HOM05D006479 ORTHO05D008310 1.1e-30 139.0 116 62.1
Nitab4.5_0000271g0260 Nicotiana tabacum HOM05D006479 ORTHO05D008310 2.0e-29 134.8 75 72.0
Nitab4.5_0000271g0270 Nicotiana tabacum HOM05D006479 ORTHO05D008310 3.4e-21 107.5 122 48.4
MSTRG.12413 Avicennia marina HOM05D006479 ORTHO05D008310 1.7e-20 105.1 104 53.8
SGA_v2.0_scaffold92G28170 Striga asiatica HOM05D006479 ORTHO05D008310 2.9e-12 77.8 101 36.6
MD07G1027800 Malus domestica HOM05D000453 ORTHO05D000387 2.1e-10 71.6 181 28.7
arahy.Tifrunner.gnm1.ann1.ITY2T4 Arachis hypogaea HOM05D001335 ORTHO05D001184 4.6e-10 70.5 172 32.0
arahy.Tifrunner.gnm1.ann1.GQT8P7 Arachis hypogaea HOM05D001335 ORTHO05D001184 1.0e-09 69.3 172 31.4
Eucgr.K02772 Eucalyptus grandis HOM05D000453 ORTHO05D000387 1.3e-09 68.9 152 30.9
Oeu044595.1 Olea europaea HOM05D000453 ORTHO05D000387 2.3e-09 68.2 241 24.9
HPP92_006712 Vanilla planifolia HOM05D000453 ORTHO05D000387 2.3e-09 68.2 161 29.2
Phvul.003G207000 Phaseolus vulgaris HOM05D000453 ORTHO05D000387 3.9e-09 67.4 160 32.5
Lj5P133T72 Lonicera japonica HOM05D000453 ORTHO05D000387 1.1e-08 65.9 161 29.8
Atru.chr10.1113 Acer truncatum HOM05D001335 ORTHO05D001184 2.5e-08 64.7 187 29.4
arahy.Tifrunner.gnm1.ann1.Q95WBF Arachis hypogaea HOM05D001335 ORTHO05D001184 2.5e-08 64.7 168 29.8
Glyma.17G126000 Glycine max HOM05D000453 ORTHO05D000387 2.5e-08 64.7 160 31.2
VMungo1215G1002 Vigna mungo HOM05D000453 ORTHO05D000387 3.3e-08 64.3 159 30.8
Phvul.002G023100 Phaseolus vulgaris HOM05D000453 ORTHO05D000387 5.6e-08 63.5 130 34.6
Rhsim07G0022000 Rhododendron simsii HOM05D001335 ORTHO05D001184 5.6e-08 63.5 161 28.0
arahy.Tifrunner.gnm1.ann1.MCR2FH Arachis hypogaea HOM05D001335 ORTHO05D001184 7.3e-08 63.2 168 29.8
Rhsim07G0021900 Rhododendron simsii HOM05D001335 ORTHO05D001184 7.3e-08 63.2 161 27.3
Haze_07633 Corylus avellana HOM05D000453 ORTHO05D000387 9.6e-08 62.8 167 27.5
arahy.Tifrunner.gnm1.ann1.C4VQXX Arachis hypogaea HOM05D001335 ORTHO05D001184 1.3e-07 62.4 168 29.8
arahy.Tifrunner.gnm1.ann1.LEPX0K Arachis hypogaea HOM05D001335 ORTHO05D001184 1.3e-07 62.4 167 29.3
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 1.6e-07 62.0 164 28.7
Glyma.05G043500 Glycine max HOM05D000453 ORTHO05D000387 2.1e-07 61.6 160 31.9
Cre07.g355750 Chlamydomonas reinhardtii HOM05D006479 ORTHO05D008310 4.8e-07 60.5 84 33.3
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 6.2e-07 60.1 161 27.3
Medtr5g018520 Medicago truncatula HOM05D000453 ORTHO05D000387 8.1e-07 59.7 137 33.6
Oeu009632.1 Olea europaea HOM05D000453 ORTHO05D000387 8.1e-07 59.7 173 26.6
arahy.Tifrunner.gnm1.ann1.WU4XQ7 Arachis hypogaea HOM05D001335 ORTHO05D001184 1.1e-06 59.3 167 28.7
Prupe.1G134400 Prunus persica HOM05D002223 ORTHO05D009240 1.1e-06 59.3 266 24.8
arahy.Tifrunner.gnm1.ann1.85MML8 Arachis hypogaea HOM05D001335 ORTHO05D001184 1.4e-06 58.9 170 28.8
arahy.Tifrunner.gnm1.ann1.DD99A7 Arachis hypogaea HOM05D001335 ORTHO05D001184 1.4e-06 58.9 168 28.6
vmacro13344 Vaccinium macrocarpon HOM05D001335 ORTHO05D001184 1.4e-06 58.9 122 34.4
arahy.Tifrunner.gnm1.ann1.3W1XRD Arachis hypogaea HOM05D000453 ORTHO05D000387 1.8e-06 58.5 146 26.7
arahy.Tifrunner.gnm1.ann1.C64BLU Arachis hypogaea HOM05D000453 ORTHO05D000387 1.8e-06 58.5 146 26.7
Cfa004227 Carpinus fangiana HOM05D000453 ORTHO05D000387 1.8e-06 58.5 126 32.5
AUR62022086 Chenopodium quinoa HOM05D000453 ORTHO05D000387 1.8e-06 58.5 154 26.0
Eucgr.G03262 Eucalyptus grandis HOM05D000453 ORTHO05D000387 1.8e-06 58.5 170 25.9
TPR.G15737 Trifolium pratense HOM05D000453 ORTHO05D000387 1.8e-06 58.5 125 32.8
AUR62024219 Chenopodium quinoa HOM05D000453 ORTHO05D000387 2.4e-06 58.2 121 30.6
Oeu027347.1 Olea europaea HOM05D000453 ORTHO05D000387 2.4e-06 58.2 73 39.7
arahy.Tifrunner.gnm1.ann1.W4V2BL Arachis hypogaea HOM05D001335 ORTHO05D001184 3.1e-06 57.8 167 28.7
Ca_24805_v3 Cicer arietinum L. HOM05D000453 ORTHO05D000387 3.1e-06 57.8 123 35.0
FAN07G0535 Fragaria x ananassa HOM05D002223 ORTHO05D009240 3.1e-06 57.8 266 25.9
FAN17G0767 Fragaria x ananassa HOM05D002223 ORTHO05D009240 3.1e-06 57.8 266 26.3
QL10p012364 Quercus lobata HOM05D000453 ORTHO05D000387 3.1e-06 57.8 145 26.9
PGSC0003DMG400006751 Solanum tuberosum HOM05D000453 ORTHO05D000387 3.1e-06 57.8 122 29.5
CiPaw.05G145700 Carya illinoinensis HOM05D000453 ORTHO05D000387 4.0e-06 57.4 158 26.6
FvH4_7g02030 Fragaria vesca HOM05D000453 ORTHO05D000387 4.0e-06 57.4 241 24.9
FAN03G3174 Fragaria x ananassa HOM05D000453 ORTHO05D000387 4.0e-06 57.4 241 24.9
FAN06G0444 Fragaria x ananassa HOM05D000453 ORTHO05D000387 4.0e-06 57.4 241 24.5
Glyma.15G149200 Glycine max HOM05D002223 ORTHO05D009240 4.0e-06 57.4 261 25.7
Psat7g159000 Pisum sativum HOM05D000453 ORTHO05D000387 4.0e-06 57.4 169 24.9
EL10Ac7g18031 Beta vulgaris HOM05D000453 ORTHO05D000387 5.3e-06 57.0 128 27.3
FAN10G3908 Fragaria x ananassa HOM05D000453 ORTHO05D000387 5.3e-06 57.0 241 24.5
Glyma.01G182100 Glycine max HOM05D000453 ORTHO05D000387 5.3e-06 57.0 129 32.6
Manes.12G095000 Manihot esculenta HOM05D000453 ORTHO05D000387 5.3e-06 57.0 127 31.5
PSO339G4916 Papaver somniferum HOM05D000453 ORTHO05D000387 5.3e-06 57.0 232 23.3
Sopen01g030180 Solanum pennellii HOM05D000453 ORTHO05D000387 5.3e-06 57.0 122 29.5
Cpa.g.sc4.23 Carica papaya HOM05D000453 ORTHO05D000387 6.9e-06 56.6 159 26.4
Glyma.09G043900 Glycine max HOM05D002223 ORTHO05D009240 6.9e-06 56.6 261 25.3
MD13G1167100 Malus domestica HOM05D002223 ORTHO05D009240 6.9e-06 56.6 263 25.5
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 6.9e-06 56.6 77 33.8
TPR.G20243 Trifolium pratense HOM05D000453 ORTHO05D000387 6.9e-06 56.6 174 24.7
CANSAT80G1588 Cannabis sativa HOM05D000453 ORTHO05D000387 9.0e-06 56.2 178 25.8
Manes.14G057200 Manihot esculenta HOM05D000453 ORTHO05D000387 9.0e-06 56.2 241 23.7


User provided reference genes

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