Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0509341 Helianthus annuus HOM05D006534 ORTHO05D006434 4.5e-19 97.8 91 100.0
Sc08g0004430 Simmondsia chinensis HOM05D006534 ORTHO05D006434 4.6e-16 87.8 91 79.1
TWI14G1419 Tripterygium wilfordii HOM05D006534 ORTHO05D006434 4.3e-14 81.3 91 83.5
Ca_02937_v3 Cicer arietinum L. HOM05D006534 ORTHO05D006434 3.7e-13 78.2 91 74.7
Phvul.007G046300 Phaseolus vulgaris HOM05D006534 ORTHO05D006434 1.1e-12 76.6 95 90.5
ECA236G3390 Erigeron canadensis HOM05D006534 ORTHO05D006434 1.5e-11 72.8 91 83.5
Aqoxy5G01709 Aquilegia oxysepala HOM05D006534 ORTHO05D006434 2.6e-11 72.0 99 75.8
Gorai.008G020000 Gossypium raimondii HOM05D006534 ORTHO05D006434 3.4e-11 71.6 91 89.0
Thecc.02G118300 Theobroma cacao HOM05D006534 ORTHO05D006434 3.4e-11 71.6 91 80.2
Potri.009G086900 Populus trichocarpa HOM05D006534 ORTHO05D006434 4.5e-11 71.2 97 82.5
TPR.G21131 Trifolium pratense HOM05D006534 ORTHO05D006434 5.9e-11 70.9 99 66.7
CsaV3_4G000160 Cucumis sativus L. HOM05D006534 ORTHO05D006434 7.7e-11 70.5 92 78.3
Atru.chr5.2330 Acer truncatum HOM05D006534 ORTHO05D006434 1.0e-10 70.1 96 79.2
ClCG10G010140 Citrullus lanatus HOM05D006534 ORTHO05D006434 1.0e-10 70.1 91 76.9
Dinv42239 Davidia involucrata HOM05D006534 ORTHO05D006434 3.8e-10 68.2 91 71.4
Lalb_Chr06g0165061 Lupinus albus HOM05D006534 ORTHO05D006434 6.5e-10 67.4 91 63.7
HPP92_006071 Vanilla planifolia HOM05D006534 ORTHO05D006434 6.5e-10 67.4 91 75.8
arahy.Tifrunner.gnm1.ann1.HPS7HM Arachis hypogaea HOM05D006534 ORTHO05D006434 8.5e-10 67.0 93 79.6
Duzib248G1096 Durio zibethinus HOM05D006534 ORTHO05D006434 8.5e-10 67.0 91 80.2
Sed0014956 Sechium edule HOM05D006534 ORTHO05D006434 1.4e-09 66.2 93 74.2
Ah.01g007070 Amaranthus hybridus HOM05D006534 ORTHO05D006434 2.5e-09 65.5 102 59.8
Oeu013796.1 Olea europaea HOM05D006534 ORTHO05D006434 2.5e-09 65.5 92 80.4
PGR042G3724 Punica granatum HOM05D006534 ORTHO05D006434 2.5e-09 65.5 93 77.4
Glyma.11G002000 Glycine max HOM05D006534 ORTHO05D006434 3.2e-09 65.1 104 69.2
GSVIVG01002630001 Vitis vinifera HOM05D006534 ORTHO05D006434 5.5e-09 64.3 91 72.5
CANSAT01G0131 Cannabis sativa HOM05D006534 ORTHO05D006434 7.2e-09 63.9 95 78.9
MD02G1187200 Malus domestica HOM05D006534 ORTHO05D006434 7.2e-09 63.9 91 76.9
Ciclev10026875m.g Citrus clementina HOM05D006534 ORTHO05D006434 9.4e-09 63.5 91 60.4
Lj5g0022695 Lotus japonicus HOM05D006534 ORTHO05D006434 9.4e-09 63.5 97 63.9
Lalb_Chr16g0389271 Lupinus albus HOM05D006534 ORTHO05D006434 9.4e-09 63.5 92 65.2
arahy.Tifrunner.gnm1.ann1.VT3BTZ Arachis hypogaea HOM05D006534 ORTHO05D006434 1.2e-08 63.2 92 79.3
Ciclev10029655m.g Citrus clementina HOM05D006534 ORTHO05D006434 1.2e-08 63.2 100 69.0
Duzib052G0836 Durio zibethinus HOM05D006534 ORTHO05D006434 1.2e-08 63.2 91 59.3
Glyma.01G242200 Glycine max HOM05D006534 ORTHO05D006434 1.2e-08 63.2 107 71.0
Sed0015576 Sechium edule HOM05D006534 ORTHO05D006434 1.2e-08 63.2 98 75.5
RcHm_v2.0_Chr2g0108271 Rosa chinensis HOM05D006534 ORTHO05D006434 1.6e-08 62.8 95 78.9
Cfa004139 Carpinus fangiana HOM05D006534 ORTHO05D006434 6.1e-08 60.8 93 57.0
FAN26G0795 Fragaria x ananassa HOM05D006534 ORTHO05D006434 6.1e-08 60.8 94 83.0
Glyma.17G160200 Glycine max HOM05D006534 ORTHO05D006434 6.1e-08 60.8 92 62.0
Ca_22100_v3 Cicer arietinum L. HOM05D006534 ORTHO05D006434 1.8e-07 59.3 92 68.5
GSVIVG01037814001 Vitis vinifera HOM05D006534 ORTHO05D006434 2.3e-07 58.9 99 69.7
BcaNung05866 Brassica carinata HOM05D006534 ORTHO05D006434 3.9e-07 58.2 88 76.1
Phvul.003G234300 Phaseolus vulgaris HOM05D006534 ORTHO05D006434 3.9e-07 58.2 92 77.2
PSO017G6129 Papaver somniferum HOM05D006534 ORTHO05D006434 6.7e-07 57.4 102 77.5
PSO170G0329 Papaver somniferum HOM05D006534 ORTHO05D006434 6.7e-07 57.4 98 73.5
CiPaw.05G018800 Carya illinoinensis HOM05D006534 ORTHO05D006434 8.8e-07 57.0 92 69.6
CDE04G3098 Ceratophyllum demersum HOM05D006534 ORTHO05D006434 8.8e-07 57.0 93 81.7
CDE06G1753 Ceratophyllum demersum HOM05D006534 ORTHO05D006434 8.8e-07 57.0 97 81.4
AL8G43700 Arabidopsis lyrata HOM05D006534 ORTHO05D006434 1.1e-06 56.6 88 70.5
AT5G67600 Arabidopsis thaliana HOM05D006534 ORTHO05D006434 1.1e-06 56.6 88 75.0
Carub.0008s2687 Capsella rubella HOM05D006534 ORTHO05D006434 1.1e-06 56.6 88 75.0
THA.LOC104821207 Tarenaya hassleriana HOM05D006534 ORTHO05D006434 1.1e-06 56.6 88 76.1
BcaC03g18364 Brassica carinata HOM05D006534 ORTHO05D006434 1.5e-06 56.2 88 62.5
CARHR279990 Cardamine hirsuta HOM05D006534 ORTHO05D006434 1.5e-06 56.2 88 70.5
Sp2g29050 Schrenkiella parvula HOM05D006534 ORTHO05D006434 2.0e-06 55.8 88 72.7
Manes.12G115500 Manihot esculenta HOM05D006534 ORTHO05D006434 3.3e-06 55.1 92 66.3
A02p44130 Brassica napus HOM05D006534 ORTHO05D006434 4.4e-06 54.7 88 72.7
C02p64390 Brassica napus HOM05D006534 ORTHO05D006434 4.4e-06 54.7 88 72.7
BolC2t12503H Brassica oleracea HOM05D006534 ORTHO05D006434 4.4e-06 54.7 88 72.7
BraA02t09336Z Brassica rapa HOM05D006534 ORTHO05D006434 4.4e-06 54.7 88 72.7
Potri.014G005200 Populus trichocarpa HOM05D006534 ORTHO05D006434 4.4e-06 54.7 91 71.4
HPP92_007768 Vanilla planifolia HOM05D006534 ORTHO05D006434 4.4e-06 54.7 101 73.3
HPP92_007868 Vanilla planifolia HOM05D006534 ORTHO05D006434 4.4e-06 54.7 101 73.3
CsaV3_7G007760 Cucumis sativus L. HOM05D006534 ORTHO05D006434 5.7e-06 54.3 96 77.1
Manes.13G110700 Manihot esculenta HOM05D006534 ORTHO05D006434 5.7e-06 54.3 91 75.8
Glyma.10G256400 Glycine max HOM05D006534 ORTHO05D006434 7.4e-06 53.9 95 73.7
Glyma.20G135200 Glycine max HOM05D006534 ORTHO05D006434 7.4e-06 53.9 95 73.7
Gohir.D13G019750 Gossypium hirsutum HOM05D006534 ORTHO05D006434 7.4e-06 53.9 75 88.0
Prupe.6G219500 Prunus persica HOM05D006534 ORTHO05D006434 9.7e-06 53.5 93 74.2


User provided reference genes

Program Settings