Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 7.3e-253 876.7 433 100.0
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 9.8e-173 610.5 445 70.8
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 2.6e-157 559.3 440 67.5
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 9.6e-128 461.1 476 53.2
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 1.7e-124 450.3 408 57.4
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 6.9e-118 428.3 412 56.1
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 1.5e-117 427.2 461 52.7
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 8.4e-116 421.4 462 51.3
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.6e-114 417.2 401 56.6
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 2.7e-114 416.4 414 55.6
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 7.9e-114 414.8 475 51.2
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.9e-112 410.2 401 53.4
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 4.8e-111 405.6 403 57.3
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 5.3e-110 402.1 401 56.4
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 9.0e-110 401.4 413 55.7
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.2e-109 401.0 421 54.9
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 5.8e-109 398.7 411 55.5
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 1.0e-108 397.9 409 54.5
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.0e-108 397.9 402 53.5
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.3e-108 397.5 401 56.4
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 1.3e-108 397.5 397 53.7
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 3.8e-108 396.0 401 54.9
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.8e-108 396.0 401 56.1
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 6.5e-108 395.2 400 57.2
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 4.2e-107 392.5 401 54.1
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 4.2e-107 392.5 395 54.2
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 7.1e-107 391.7 394 55.6
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 1.6e-106 390.6 424 52.4
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.5e-106 389.4 392 54.3
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 6.1e-106 388.7 401 54.6
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 6.1e-106 388.7 394 55.1
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 1.0e-105 387.9 477 47.6
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 3.9e-105 386.0 402 52.2
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 3.9e-105 386.0 397 53.4
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 8.7e-105 384.8 410 53.7
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 9.7e-104 381.3 388 54.6
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 1.3e-103 380.9 398 52.8
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 3.7e-103 379.4 391 54.2
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 3.7e-103 379.4 396 52.8
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 8.2e-103 378.3 470 47.7
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 2.4e-102 376.7 429 51.3
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 9.0e-102 374.8 395 53.9
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.2e-101 374.4 395 53.9
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 1.2e-101 374.4 404 53.0
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 2.0e-101 373.6 395 53.7
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.0e-101 373.6 398 51.8
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 2.6e-101 373.2 387 54.0
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 3.4e-101 372.9 411 53.3
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 4.5e-101 372.5 409 52.8
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 4.5e-101 372.5 399 53.6
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.3e-100 370.9 453 49.2
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.2e-100 370.2 395 53.4
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 5.0e-100 369.0 421 48.7
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.4e-99 367.5 395 53.7
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 4.2e-99 365.9 417 52.5
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 4.6e-98 362.5 387 53.2
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 1.8e-97 360.5 405 49.1
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 6.7e-97 358.6 397 50.9
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 2.5e-96 356.7 399 50.4
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 5.7e-96 355.5 387 49.9
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 7.4e-96 355.1 412 49.8
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 2.2e-95 353.6 412 49.5
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 3.7e-95 352.8 403 50.1
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 4.8e-95 352.4 391 51.7
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 8.2e-95 351.7 396 51.5
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 1.1e-94 351.3 429 47.6
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.4e-94 350.9 465 45.6
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 5.3e-94 349.0 426 48.6
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 9.1e-94 348.2 395 49.9
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 4.5e-93 345.9 396 50.0
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 4.5e-93 345.9 394 49.0
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 5.9e-93 345.5 397 48.9
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 1.3e-92 344.4 375 50.1
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.9e-92 343.2 463 43.2
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 3.8e-92 342.8 408 48.5
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 1.9e-91 340.5 421 47.7
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 2.5e-91 340.1 423 47.0
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 5.5e-91 339.0 390 48.5
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.2e-90 337.8 383 49.6
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 1.2e-90 337.8 391 50.1
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 1.6e-90 337.4 383 49.9
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 7.9e-90 335.1 404 47.8
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 1.4e-89 334.3 381 49.6
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 8.8e-89 331.6 382 49.5
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 8.8e-89 331.6 397 49.6
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 1.5e-88 330.9 474 43.9
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 5.7e-88 328.9 441 44.2
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 1.7e-87 327.4 465 44.3
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 4.8e-87 325.9 409 46.7
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.8e-86 323.9 401 45.1
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 5.3e-86 322.4 406 45.3
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 2.5e-83 313.5 340 50.6
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 5.5e-83 312.4 369 49.6
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.2e-82 311.2 341 50.7
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.6e-82 310.8 469 41.8
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.1e-82 310.5 416 45.4
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 3.6e-82 309.7 380 49.7
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 4.7e-82 309.3 418 43.5
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 1.8e-81 307.4 403 46.4
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 8.8e-81 305.1 385 46.0
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 8.8e-81 305.1 396 46.7
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 9.7e-80 301.6 332 49.7
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 5.3e-78 295.8 480 39.0
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 9.1e-78 295.0 388 44.1
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 2.6e-77 293.5 361 50.7
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 5.9e-77 292.4 200 72.5
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.3e-76 291.2 409 42.3
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 6.5e-76 288.9 376 44.4
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 1.5e-75 287.7 397 43.3
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 4.7e-74 282.7 387 43.7
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 3.0e-73 280.0 433 41.1
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 7.5e-72 275.4 392 43.1
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.2e-71 273.9 441 41.5
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 3.7e-71 273.1 398 44.0
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 1.1e-70 271.6 385 42.9
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 2.4e-70 270.4 386 42.7
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.4e-70 270.4 441 41.0
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 7.0e-70 268.9 386 42.2
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 7.7e-69 265.4 372 44.9
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 3.8e-68 263.1 385 42.3
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 3.2e-67 260.0 379 42.5
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 2.0e-64 250.8 299 47.8
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 1.3e-63 248.1 203 59.6
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 3.7e-63 246.5 380 38.9
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 3.8e-60 236.5 402 39.3
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 5.5e-59 232.6 204 56.4
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 8.0e-58 228.8 403 35.0
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.8e-57 225.7 496 33.5
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 8.9e-57 225.3 428 37.9
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 5.7e-56 222.6 395 35.2
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 9.8e-56 221.9 206 52.9
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.4e-54 217.2 507 33.5
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 1.3e-52 211.5 427 34.4
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.7e-50 203.0 415 33.7
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.4e-46 189.5 391 36.3
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 7.0e-46 189.1 400 32.8
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 1.5e-43 181.4 157 54.1
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 9.5e-43 178.7 501 29.5
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 6.2e-42 176.0 161 55.9
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 6.2e-42 176.0 161 55.9
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.4e-38 164.9 440 30.9
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.6e-37 161.4 165 50.9
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 4.6e-37 159.8 163 51.5
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.9e-35 154.5 163 49.7
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 6.2e-34 149.4 375 29.6
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 3.1e-33 147.1 275 37.8
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 3.1e-33 147.1 275 37.8
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 2.1e-29 134.4 162 39.5
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 1.0e-28 132.1 108 54.6
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 3.3e-27 127.1 230 38.7
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 2.0e-24 117.9 232 37.1
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.7e-23 114.8 150 41.3
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.3e-15 88.6 248 29.8
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 1.9e-11 74.7 79 44.3
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 4.0e-09 67.0 124 35.5
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 9.9e-08 62.4 126 28.6


User provided reference genes

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