Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 0.0e+00 1442.6 753 100.0
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 0.0e+00 1359.4 753 94.6
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 0.0e+00 1149.4 734 82.0
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 4.5e-282 974.5 768 68.4
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 2.6e-274 948.7 650 77.1
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 2.1e-271 939.1 767 66.2
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 7.0e-267 924.1 762 66.3
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 2.4e-259 899.0 806 61.3
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 2.0e-253 879.4 765 61.0
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 5.4e-251 871.3 737 63.9
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 4.2e-248 861.7 772 60.1
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 1.2e-247 860.1 765 59.9
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 1.8e-246 856.3 772 60.5
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 5.2e-246 854.7 763 60.6
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 1.2e-245 853.6 762 60.6
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 2.6e-245 852.4 762 59.8
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 3.4e-245 852.0 762 60.2
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 4.4e-245 851.7 761 61.4
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 2.8e-244 849.0 770 60.3
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 6.3e-244 847.8 776 60.7
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 8.3e-244 847.4 767 60.8
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 4.1e-243 845.1 761 59.9
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 7.0e-243 844.3 779 58.8
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 9.1e-243 844.0 760 58.7
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 7.7e-242 840.9 766 60.4
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 1.3e-241 840.1 756 60.4
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 6.6e-241 837.8 761 60.2
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.1e-240 837.0 763 58.7
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 1.2e-239 833.6 762 61.2
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 8.0e-239 830.9 765 59.6
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 1.0e-238 830.5 765 59.7
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 4.4e-237 825.1 750 59.3
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 5.7e-237 824.7 757 58.8
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 4.9e-236 821.6 765 59.2
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 8.3e-236 820.8 764 58.0
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 5.4e-235 818.1 757 59.0
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 1.2e-234 817.0 767 59.5
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 2.0e-234 816.2 764 57.2
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 2.7e-234 815.8 758 58.6
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 3.5e-234 815.5 768 57.0
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 1.0e-233 813.9 759 58.9
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.6e-233 811.2 774 57.8
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 1.5e-232 810.1 775 56.5
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.5e-232 810.1 756 58.2
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 1.6e-231 806.6 764 57.2
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.6e-231 806.6 767 57.4
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 3.6e-231 805.4 763 57.5
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 1.0e-230 803.9 785 56.4
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 1.2e-229 800.4 768 57.8
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.6e-229 799.3 769 57.2
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 1.3e-228 797.0 764 55.5
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 1.7e-228 796.6 764 55.8
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 3.7e-228 795.4 764 56.0
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 1.9e-227 793.1 762 55.9
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 3.2e-227 792.3 764 55.8
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 9.2e-227 790.8 764 55.8
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 1.3e-225 786.9 777 56.4
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 1.7e-225 786.6 717 59.6
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 3.9e-225 785.4 760 55.8
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 8.6e-225 784.3 761 55.8
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 1.9e-224 783.1 786 54.6
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 5.6e-224 781.6 787 54.1
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 2.1e-223 779.6 754 54.6
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 2.1e-223 779.6 766 56.0
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 3.6e-223 778.9 774 56.3
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 8.1e-223 777.7 761 55.2
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 1.8e-222 776.5 735 61.8
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 4.0e-222 775.4 762 56.7
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 1.3e-220 770.4 767 54.4
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 1.3e-220 770.4 735 57.8
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 5.4e-219 765.0 711 58.9
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 5.4e-219 765.0 779 54.0
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 7.1e-219 764.6 767 55.4
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 6.0e-218 761.5 792 55.1
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 1.3e-217 760.4 779 54.0
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 8.6e-217 757.7 770 54.5
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 1.7e-212 743.4 807 52.5
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.9e-211 740.0 762 53.5
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 1.9e-211 740.0 689 58.5
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 3.1e-206 722.6 752 54.5
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 4.0e-206 722.2 756 56.6
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 7.1e-203 711.4 577 65.2
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 2.1e-202 709.9 730 54.1
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 3.5e-202 709.1 713 54.7
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.3e-199 700.7 759 52.0
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.3e-199 700.7 755 51.7
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 2.6e-197 693.0 758 51.1
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 4.4e-197 692.2 763 50.9
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.9e-192 676.8 575 62.6
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 9.6e-192 674.5 739 51.6
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 2.0e-189 666.8 574 62.9
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 4.5e-189 665.6 572 62.6
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 1.4e-187 660.6 564 62.9
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 1.3e-185 654.1 517 69.1
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 5.1e-185 652.1 763 50.7
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 1.6e-183 647.1 571 60.9
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 6.9e-182 641.7 570 61.2
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 2.0e-181 640.2 656 53.5
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 3.2e-179 632.9 571 60.8
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 3.9e-177 625.9 746 49.6
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.1e-176 624.4 458 72.1
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 2.8e-175 619.8 529 63.3
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.7e-175 619.4 759 49.5
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.4e-174 617.5 524 64.9
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 2.7e-170 603.2 581 57.0
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 4.6e-162 575.9 757 46.0
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 2.6e-152 543.5 610 49.0
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 3.3e-152 543.1 776 40.3
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 9.4e-147 525.0 519 54.7
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.3e-132 478.0 506 52.6
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 7.3e-115 419.1 434 51.4
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 2.0e-112 411.0 341 62.2
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 6.6e-108 396.0 287 71.4
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 8.1e-106 389.0 811 31.9
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 2.9e-103 380.6 384 55.2
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 3.2e-102 377.1 480 47.9
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 2.7e-101 374.0 325 60.9
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.2e-96 358.6 479 48.4
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 2.4e-94 350.9 284 64.4
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 6.0e-93 346.3 539 42.9
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 9.6e-91 339.0 284 62.7
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 2.2e-87 327.8 753 29.2
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.0e-84 318.9 739 29.5
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 4.8e-82 310.1 284 60.2
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 3.4e-72 277.3 229 64.2
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 3.2e-70 270.8 347 43.2
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 7.4e-67 259.6 176 73.9
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 6.5e-63 246.5 208 61.1
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 1.3e-52 212.2 644 26.6
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.2e-48 199.1 205 54.1
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.6e-45 187.6 421 33.5
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 4.7e-45 187.2 421 33.5
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 3.8e-39 167.5 140 60.7
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 1.1e-33 149.4 192 44.3
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 1.0e-31 142.9 244 40.6
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 1.3e-31 142.5 193 43.5
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 4.0e-28 131.0 291 35.4
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 5.7e-27 127.1 108 62.0
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.3e-18 99.4 80 65.0
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 8.3e-18 96.7 85 58.8
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.1e-17 96.3 245 33.1
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 7.0e-17 93.6 85 57.6
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.2e-16 92.8 290 25.9
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.9e-15 88.2 70 62.9
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 8.0e-13 80.1 62 62.9
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 3.0e-12 78.2 117 40.2
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 6.3e-10 70.5 82 39.0
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 5.9e-08 63.9 72 45.8
Cfa026774 Carpinus fangiana HOM05D004734 ORTHO05D126311 2.5e-06 58.5 182 23.6
MCO12G150 Micromonas commoda HOM05D004734 ORTHO05D006019 2.5e-06 58.5 317 24.6
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 2.5e-06 58.5 126 34.1


User provided reference genes

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