Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 1.5e-71 272.7 134 100.0
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 1.9e-42 176.0 101 85.1
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 5.6e-34 147.9 101 68.3
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 9.5e-34 147.1 88 76.1
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 2.1e-33 146.0 95 70.5
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 1.8e-32 142.9 101 65.3
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 1.8e-32 142.9 101 65.3
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.3e-32 142.5 88 72.7
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 6.8e-32 141.0 86 76.7
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 8.9e-32 140.6 88 71.6
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 1.5e-31 139.8 101 68.3
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 1.5e-31 139.8 89 71.9
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.0e-31 139.4 88 71.6
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.0e-31 139.4 88 71.6
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 2.0e-31 139.4 86 75.6
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 2.6e-31 139.0 92 71.7
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 4.4e-31 138.3 86 75.6
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 9.8e-31 137.1 92 69.6
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.3e-30 136.7 86 74.4
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.3e-30 136.7 86 73.3
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 1.3e-30 136.7 86 74.4
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.3e-30 136.7 86 73.3
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 1.7e-30 136.3 89 69.7
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 2.2e-30 136.0 94 68.1
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 2.2e-30 136.0 86 73.3
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.2e-30 136.0 86 72.1
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.2e-30 136.0 86 72.1
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.9e-30 135.6 86 70.9
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 3.7e-30 135.2 92 68.5
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 3.7e-30 135.2 86 68.6
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.7e-30 135.2 86 72.1
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 3.7e-30 135.2 86 73.3
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 4.9e-30 134.8 86 72.1
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 4.9e-30 134.8 102 59.8
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 6.4e-30 134.4 101 66.3
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 6.4e-30 134.4 88 73.9
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 6.4e-30 134.4 86 70.9
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 8.3e-30 134.0 86 69.8
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 8.3e-30 134.0 86 72.1
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 8.3e-30 134.0 88 72.7
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 8.3e-30 134.0 88 72.7
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 1.1e-29 133.7 86 68.6
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.1e-29 133.7 86 70.9
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.1e-29 133.7 86 70.9
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.1e-29 133.7 101 66.3
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 1.4e-29 133.3 86 72.1
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 1.4e-29 133.3 86 70.9
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 1.4e-29 133.3 86 72.1
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.4e-29 133.3 86 69.8
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 1.9e-29 132.9 92 66.3
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.9e-29 132.9 86 68.6
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.9e-29 132.9 86 70.9
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.4e-29 132.5 86 69.8
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 2.4e-29 132.5 86 69.8
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 3.2e-29 132.1 102 65.7
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 3.2e-29 132.1 88 71.6
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 4.1e-29 131.7 86 72.1
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 5.4e-29 131.3 86 70.9
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 5.4e-29 131.3 93 65.6
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 5.4e-29 131.3 86 69.8
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 5.4e-29 131.3 83 69.9
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 7.0e-29 131.0 93 64.5
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 9.2e-29 130.6 115 56.5
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 1.2e-28 130.2 101 61.4
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 1.6e-28 129.8 88 67.0
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 2.0e-28 129.4 87 69.0
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 2.0e-28 129.4 92 63.0
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 2.7e-28 129.0 95 64.2
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 2.7e-28 129.0 86 69.8
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 3.5e-28 128.6 89 65.2
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 6.0e-28 127.9 98 63.3
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 6.0e-28 127.9 88 67.0
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 1.0e-27 127.1 87 70.1
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.0e-27 127.1 86 67.4
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.7e-27 126.3 83 67.5
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 2.3e-27 125.9 88 63.6
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 2.3e-27 125.9 83 68.7
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 3.0e-27 125.6 88 65.9
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 3.0e-27 125.6 87 70.1
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 3.9e-27 125.2 86 65.1
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 5.0e-27 124.8 97 60.8
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 5.0e-27 124.8 88 63.6
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 5.0e-27 124.8 86 65.1
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 6.6e-27 124.4 89 62.9
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 6.6e-27 124.4 89 62.9
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 6.6e-27 124.4 86 66.3
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 6.6e-27 124.4 86 66.3
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 8.6e-27 124.0 83 67.5
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 1.1e-26 123.6 86 66.3
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.1e-26 123.6 86 66.3
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 1.1e-26 123.6 88 64.8
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.5e-26 123.2 88 64.8
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 1.5e-26 123.2 94 59.6
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 1.5e-26 123.2 87 66.7
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 1.9e-26 122.9 86 66.3
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 5.6e-26 121.3 98 61.2
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.1e-25 119.4 93 58.1
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 8.1e-25 117.5 87 60.9
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 1.1e-24 117.1 88 62.5
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.4e-24 116.7 86 61.6
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 1.4e-24 116.7 86 59.3
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 1.8e-24 116.3 87 59.8
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 2.3e-24 115.9 86 62.8
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 3.1e-24 115.5 86 61.6
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 5.2e-24 114.8 86 60.5
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 5.2e-24 114.8 86 55.8
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 1.5e-23 113.2 93 57.0
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 2.6e-23 112.5 87 63.2
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 2.6e-23 112.5 87 57.5
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 4.4e-23 111.7 87 57.5
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 4.4e-23 111.7 86 54.7
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 5.8e-23 111.3 93 57.0
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 7.5e-23 110.9 93 54.8
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 1.3e-22 110.2 113 50.4
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 4.9e-22 108.2 86 58.1
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 1.4e-21 106.7 89 55.1
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 3.2e-21 105.5 89 53.9
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 7.8e-20 100.9 74 70.3
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 7.8e-20 100.9 91 53.8
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 7.8e-20 100.9 80 58.8
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 3.9e-19 98.6 80 53.8
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.5e-18 96.7 86 50.0
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 4.3e-18 95.1 80 51.2
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 1.6e-17 93.2 80 51.2
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 2.1e-17 92.8 78 50.0
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 2.8e-17 92.4 61 72.1
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 8.9e-16 87.4 93 44.1
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 8.9e-16 87.4 60 73.3
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 8.9e-16 87.4 60 73.3
DCAR_013830 Daucus carota HOM05D004293 ORTHO05D005044 6.4e-06 54.7 71 40.8
ECA246G0240 Erigeron canadensis HOM05D004293 ORTHO05D005044 8.4e-06 54.3 71 36.6


User provided reference genes

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