Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0506281 Helianthus annuus HOM05D029082 ORTHO05D010624 1.3e-146 523.1 268 100.0
ECA248G2152 Erigeron canadensis HOM05D029082 ORTHO05D010624 1.2e-80 303.9 206 77.2
HanXRQChr01g0004171 Helianthus annuus HOM05D029082 ORTHO05D010624 1.6e-72 276.9 185 78.4
Lsat_1_v5_gn_1_129701 Lactuca sativa HOM05D009845 ORTHO05D010624 7.4e-54 214.9 211 62.6
ECA232G3827 Erigeron canadensis HOM05D029082 ORTHO05D010624 7.2e-33 145.2 111 68.5
ECA234G2594 Erigeron canadensis HOM05D001434 ORTHO05D003121 1.2e-14 84.7 100 50.0
Lsat_1_v5_gn_4_59260 Lactuca sativa HOM05D001434 ORTHO05D003121 1.2e-14 84.7 98 49.0
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 2.6e-14 83.6 54 68.5
MSTRG.25414 Avicennia marina HOM05D009845 ORTHO05D010624 7.5e-14 82.0 54 68.5
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 7.5e-14 82.0 54 68.5
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 7.5e-14 82.0 54 68.5
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 7.5e-14 82.0 54 68.5
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 2.2e-13 80.5 54 66.7
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 3.7e-13 79.7 54 66.7
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 4.9e-13 79.3 54 64.8
CANSAT16G0049 Cannabis sativa HOM05D009845 ORTHO05D010624 6.3e-13 79.0 54 68.5
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 1.1e-12 78.2 90 47.8
Dinv13914 Davidia involucrata HOM05D001434 ORTHO05D003121 1.4e-12 77.8 96 54.2
Oeu033677.1 Olea europaea HOM05D009845 ORTHO05D010624 1.8e-12 77.4 54 64.8
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.0e-12 75.5 55 63.6
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 9.2e-12 75.1 54 61.1
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 1.2e-11 74.7 46 73.9
Nitab4.5_0000687g0270 Nicotiana tabacum HOM05D009845 ORTHO05D010624 1.2e-11 74.7 54 61.1
Sabra04G0031300 Salix brachista HOM05D009845 ORTHO05D010624 1.2e-11 74.7 54 66.7
ECA236G2724 Erigeron canadensis HOM05D001434 ORTHO05D003121 1.6e-11 74.3 94 52.1
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.6e-11 74.3 54 61.1
Potri.004G049600 Populus trichocarpa HOM05D009845 ORTHO05D010624 2.7e-11 73.6 54 64.8
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 3.5e-11 73.2 46 71.7
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 4.5e-11 72.8 48 68.8
TPR.G11219 Trifolium pratense HOM05D009845 ORTHO05D010624 4.5e-11 72.8 46 69.6
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 5.9e-11 72.4 55 58.2
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 5.9e-11 72.4 46 69.6
arahy.Tifrunner.gnm1.ann1.3S39J7 Arachis hypogaea HOM05D009845 ORTHO05D010624 1.7e-10 70.9 46 69.6
arahy.Tifrunner.gnm1.ann1.L3Y80W Arachis hypogaea HOM05D009845 ORTHO05D010624 1.7e-10 70.9 46 69.6
arahy.Tifrunner.gnm1.ann1.W8CL8V Arachis hypogaea HOM05D009845 ORTHO05D010624 1.7e-10 70.9 46 69.6
arahy.Tifrunner.gnm1.ann1.XL5EFA Arachis hypogaea HOM05D009845 ORTHO05D010624 1.7e-10 70.9 46 69.6
arahy.Tifrunner.gnm1.ann1.XS77WZ Arachis hypogaea HOM05D009845 ORTHO05D010624 1.7e-10 70.9 46 69.6
HanXRQChr16g0515491 Helianthus annuus HOM05D001434 ORTHO05D003121 1.1e-09 68.2 78 48.7
Lalb_Chr08g0236141 Lupinus albus HOM05D009845 ORTHO05D010624 1.5e-09 67.8 46 67.4
Lalb_Chr23g0273071 Lupinus albus HOM05D009845 ORTHO05D010624 1.5e-09 67.8 46 67.4
Phvul.009G182700 Phaseolus vulgaris HOM05D009845 ORTHO05D010624 2.5e-09 67.0 48 62.5
SHI20512 Sapria himalayana HOM05D009845 ORTHO05D010624 3.3e-09 66.6 54 57.4
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 4.3e-09 66.2 46 65.2
VMungo1309G2800 Vigna mungo HOM05D009845 ORTHO05D010624 7.3e-09 65.5 48 60.4
TWI39G0104 Tripterygium wilfordii HOM05D011069 ORTHO05D010624 9.5e-09 65.1 46 60.9
Glyma.04G178000 Glycine max HOM05D009845 ORTHO05D010624 1.2e-08 64.7 44 65.9
Glyma.04G178200 Glycine max HOM05D009845 ORTHO05D010624 2.1e-08 63.9 44 65.9
Carub.0004s2920 Capsella rubella HOM05D011069 ORTHO05D010624 2.8e-08 63.5 79 40.5
Sp4g28540 Schrenkiella parvula HOM05D011069 ORTHO05D010624 3.6e-08 63.2 50 56.0
Dinv20067 Davidia involucrata HOM05D001110 ORTHO05D003121 6.1e-08 62.4 99 45.5
CARHR141830 Cardamine hirsuta HOM05D011069 ORTHO05D010624 8.0e-08 62.0 50 54.0
Thhalv10001774m.g Eutrema salsugineum HOM05D011069 ORTHO05D010624 2.3e-07 60.5 48 56.2
Hma1.2p1_0298F.1_g117710 Hydrangea macrophylla HOM05D001434 ORTHO05D003121 2.3e-07 60.5 100 46.0
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 2.3e-07 60.5 34 76.5
Aa31sc13G60 Aethionema arabicum HOM05D011069 ORTHO05D010624 4.0e-07 59.7 67 46.3
RcHm_v2.0_Chr6g0257981 Rosa chinensis HOM05D022571 ORTHO05D010624 4.0e-07 59.7 54 50.0
SHI33643 Sapria himalayana HOM05D005794 ORTHO05D010624 6.8e-07 58.9 33 75.8
Ah.01g013130 Amaranthus hybridus HOM05D007797 ORTHO05D009741 4.4e-06 56.2 56 48.2
BcaNung05601 Brassica carinata HOM05D011069 ORTHO05D010624 7.5e-06 55.5 50 50.0
AT2G46505 Arabidopsis thaliana HOM05D011069 ORTHO05D010624 9.8e-06 55.1 50 48.0
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 9.8e-06 55.1 48 52.1


User provided reference genes

Program Settings