Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0503891 Helianthus annuus HOM05D000088 ORTHO05D006380 3.4e-58 228.0 109 100.0
HanXRQChr10g0312151 Helianthus annuus HOM05D000088 ORTHO05D006380 1.1e-35 153.3 94 79.8
ECA236G4487 Erigeron canadensis HOM05D000088 ORTHO05D006380 3.1e-35 151.8 94 77.7
COL.COLO4_22563 Corchorus olitorius HOM05D000088 ORTHO05D006380 8.5e-33 143.7 92 75.0
QL01p039724 Quercus lobata HOM05D000088 ORTHO05D006380 1.5e-32 142.9 92 75.0
Hma1.2p1_0841F.1_g226840 Hydrangea macrophylla HOM05D000088 ORTHO05D006380 1.9e-32 142.5 92 75.0
Manes.18G144500 Manihot esculenta HOM05D000088 ORTHO05D006380 3.2e-32 141.7 92 73.9
Sed0001583 Sechium edule HOM05D000088 ORTHO05D006380 5.5e-32 141.0 92 72.8
CSS0004336 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D006380 7.2e-32 140.6 92 73.9
CSS0043996 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D006380 7.2e-32 140.6 92 73.9
Glyma.02G229900 Glycine max HOM05D000088 ORTHO05D006380 7.2e-32 140.6 92 71.7
Cpa.g.sc2.387 Carica papaya HOM05D000088 ORTHO05D006380 9.4e-32 140.2 92 71.7
Duzib147G0696 Durio zibethinus HOM05D000088 ORTHO05D006380 1.2e-31 139.8 92 71.7
Thecc.01G003500 Theobroma cacao HOM05D000088 ORTHO05D006380 1.6e-31 139.4 92 72.8
CiPaw.13G072600 Carya illinoinensis HOM05D000088 ORTHO05D006380 2.1e-31 139.0 92 70.7
Migut.N00772 Erythranthe guttata HOM05D000088 ORTHO05D006380 2.1e-31 139.0 93 71.0
ClCG02G019340 Citrullus lanatus HOM05D000088 ORTHO05D006380 2.7e-31 138.7 92 72.8
VMungo0647G1890 Vigna mungo HOM05D000088 ORTHO05D006380 2.7e-31 138.7 92 71.7
Glyma.14G196600 Glycine max HOM05D000088 ORTHO05D006380 3.6e-31 138.3 92 71.7
Prupe.6G051800 Prunus persica HOM05D000088 ORTHO05D006380 4.7e-31 137.9 92 71.7
GSVIVG01024679001 Vitis vinifera HOM05D000088 ORTHO05D006380 4.7e-31 137.9 92 71.7
Actinidia32622 Actinidia chinensis HOM05D000088 ORTHO05D006380 6.1e-31 137.5 92 71.7
Dinv09654 Davidia involucrata HOM05D000088 ORTHO05D006380 6.1e-31 137.5 91 73.6
Gohir.D07G178600 Gossypium hirsutum HOM05D000088 ORTHO05D006380 6.1e-31 137.5 91 73.6
Gorai.001G199800 Gossypium raimondii HOM05D000088 ORTHO05D006380 6.1e-31 137.5 91 73.6
RcHm_v2.0_Chr5g0070921 Rosa chinensis HOM05D000088 ORTHO05D006380 6.1e-31 137.5 92 72.8
vmacro02936 Vaccinium macrocarpon HOM05D000088 ORTHO05D006380 6.1e-31 137.5 90 75.6
Ca_05636_v3 Cicer arietinum L. HOM05D000088 ORTHO05D006380 8.0e-31 137.1 92 69.6
MELO3C026840.2 Cucumis melo HOM05D000088 ORTHO05D006380 8.0e-31 137.1 92 70.7
CsaV3_6G015960 Cucumis sativus L. HOM05D000088 ORTHO05D006380 8.0e-31 137.1 92 70.7
Gohir.A07G171900 Gossypium hirsutum HOM05D000088 ORTHO05D006380 8.0e-31 137.1 92 73.9
Medtr5g072500 Medicago truncatula HOM05D000088 ORTHO05D006380 8.0e-31 137.1 92 69.6
Phvul.008G258400 Phaseolus vulgaris HOM05D000088 ORTHO05D006380 8.0e-31 137.1 92 70.7
Atru.chr3.4153 Acer truncatum HOM05D000088 ORTHO05D006380 1.0e-30 136.7 92 70.7
MD11G1065600 Malus domestica HOM05D000088 ORTHO05D006380 1.0e-30 136.7 92 68.5
Rhsim13G0066000 Rhododendron simsii HOM05D000088 ORTHO05D006380 1.0e-30 136.7 90 73.3
TAR633G2705 Trochodendron aralioides HOM05D000088 ORTHO05D006380 1.0e-30 136.7 92 70.7
MSTRG.17885 Avicennia marina HOM05D000088 ORTHO05D006380 1.4e-30 136.3 92 71.7
DCAR_007353 Daucus carota HOM05D001929 ORTHO05D002426 1.4e-30 136.3 92 70.7
HanXRQChr16g0528621 Helianthus annuus HOM05D000088 ORTHO05D006380 1.4e-30 136.3 73 91.8
Lj1A128T44 Lonicera japonica HOM05D000088 ORTHO05D006380 1.4e-30 136.3 92 75.0
Nitab4.5_0006308g0020 Nicotiana tabacum HOM05D000088 ORTHO05D006380 1.4e-30 136.3 91 71.4
Potri.009G075900 Populus trichocarpa HOM05D000088 ORTHO05D006380 1.4e-30 136.3 94 67.0
THA.LOC104810695 Tarenaya hassleriana HOM05D000088 ORTHO05D006380 1.4e-30 136.3 92 68.5
Cfa011746 Carpinus fangiana HOM05D000088 ORTHO05D006380 1.8e-30 136.0 92 70.7
Lalb_Chr04g0252091 Lupinus albus HOM05D000088 ORTHO05D006380 1.8e-30 136.0 92 70.7
Actinidia23214 Actinidia chinensis HOM05D000088 ORTHO05D006380 2.3e-30 135.6 92 70.7
Eucgr.J01907 Eucalyptus grandis HOM05D001929 ORTHO05D002426 2.3e-30 135.6 92 68.5
Peaxi162Scf00540g00014 Petunia axillaris HOM05D000088 ORTHO05D006380 2.3e-30 135.6 92 69.6
Solyc06g082190.3 Solanum lycopersicum HOM05D000088 ORTHO05D006380 2.3e-30 135.6 91 71.4
Sopen06g033570 Solanum pennellii HOM05D000088 ORTHO05D006380 2.3e-30 135.6 91 71.4
arahy.Tifrunner.gnm1.ann1.K6VENA Arachis hypogaea HOM05D000088 ORTHO05D006380 3.0e-30 135.2 92 68.5
CAN.G1095.16 Capsicum annuum HOM05D000088 ORTHO05D006380 3.0e-30 135.2 91 71.4
Oeu049284.1 Olea europaea HOM05D000088 ORTHO05D006380 3.0e-30 135.2 92 70.7
Phvul.006G072300 Phaseolus vulgaris HOM05D000088 ORTHO05D006380 3.0e-30 135.2 92 68.5
FvH4_3g39380 Fragaria vesca HOM05D000088 ORTHO05D006380 4.0e-30 134.8 92 71.7
FAN11G0766 Fragaria x ananassa HOM05D000088 ORTHO05D006380 4.0e-30 134.8 92 71.7
Sabra09G0057800 Salix brachista HOM05D000088 ORTHO05D006380 4.0e-30 134.8 94 64.9
PGSC0003DMG400030450 Solanum tuberosum HOM05D000088 ORTHO05D006380 4.0e-30 134.8 91 70.3
Glyma.11G166000 Glycine max HOM05D000088 ORTHO05D006380 5.2e-30 134.4 92 69.6
Lj6g0013953 Lotus japonicus HOM05D000088 ORTHO05D006380 5.2e-30 134.4 94 70.2
Nitab4.5_0001115g0070 Nicotiana tabacum HOM05D000088 ORTHO05D006380 5.2e-30 134.4 92 68.5
Psat2g055320 Pisum sativum HOM05D000088 ORTHO05D006380 6.8e-30 134.0 92 67.4
Ciclev10028051m.g Citrus clementina HOM05D000088 ORTHO05D006380 8.8e-30 133.7 92 69.6
Cc02_g20710 Coffea canephora HOM05D000088 ORTHO05D006380 8.8e-30 133.7 92 70.7
Nitab4.5_0002043g0020 Nicotiana tabacum HOM05D000088 ORTHO05D006380 8.8e-30 133.7 91 69.2
PGR119G0811 Punica granatum HOM05D000088 ORTHO05D006380 8.8e-30 133.7 92 67.4
FAN16G3274 Fragaria x ananassa HOM05D000088 ORTHO05D006380 1.5e-29 132.9 92 69.6
CARHR272350 Cardamine hirsuta HOM05D000088 ORTHO05D006380 2.6e-29 132.1 87 70.1
FAN25G0512 Fragaria x ananassa HOM05D000088 ORTHO05D006380 2.6e-29 132.1 92 69.6
TAR636G0713 Trochodendron aralioides HOM05D000088 ORTHO05D006380 2.6e-29 132.1 89 70.8
Manes.02G213600 Manihot esculenta HOM05D000088 ORTHO05D006380 3.4e-29 131.7 92 69.6
Thhalv10013017m.g Eutrema salsugineum HOM05D000088 ORTHO05D006380 4.4e-29 131.3 87 70.1
LjContig00141g0016544 Lotus japonicus HOM05D000088 ORTHO05D006380 4.4e-29 131.3 92 66.3
Lalb_Chr17g0345281 Lupinus albus HOM05D000088 ORTHO05D006380 4.4e-29 131.3 91 67.0
Lalb_Chr18g0051271 Lupinus albus HOM05D000088 ORTHO05D006380 4.4e-29 131.3 92 67.4
Ca_14989_v3 Cicer arietinum L. HOM05D000088 ORTHO05D006380 5.7e-29 131.0 92 68.5
Ca_30102_v3 Cicer arietinum L. HOM05D000088 ORTHO05D006380 5.7e-29 131.0 92 68.5
FAN21G3629 Fragaria x ananassa HOM05D000088 ORTHO05D006380 5.7e-29 131.0 92 68.5
Glyma.18G058800 Glycine max HOM05D000088 ORTHO05D006380 5.7e-29 131.0 92 67.4
TPR.G32888 Trifolium pratense HOM05D000088 ORTHO05D006380 5.7e-29 131.0 92 68.5
BcaB01g04518 Brassica carinata HOM05D000088 ORTHO05D006380 7.5e-29 130.6 87 70.1
Potri.001G280700 Populus trichocarpa HOM05D000088 ORTHO05D006380 7.5e-29 130.6 85 70.6
A03p12190 Brassica napus HOM05D000088 ORTHO05D006380 9.8e-29 130.2 87 69.0
C03p14260 Brassica napus HOM05D000088 ORTHO05D006380 9.8e-29 130.2 87 69.0
BolC3t13873H Brassica oleracea HOM05D000088 ORTHO05D006380 9.8e-29 130.2 87 69.0
BraA03t10530Z Brassica rapa HOM05D000088 ORTHO05D006380 9.8e-29 130.2 87 69.0
Carub.0008s1911 Capsella rubella HOM05D000088 ORTHO05D006380 9.8e-29 130.2 87 67.8
Sc12g0000250 Simmondsia chinensis HOM05D000088 ORTHO05D006380 9.8e-29 130.2 91 68.1
SGA_v2.0_scaffold80G25722 Striga asiatica HOM05D000088 ORTHO05D006380 9.8e-29 130.2 92 67.4
AL8G34760 Arabidopsis lyrata HOM05D000088 ORTHO05D006380 1.3e-28 129.8 87 69.0
AT5G58520 Arabidopsis thaliana HOM05D000088 ORTHO05D006380 1.3e-28 129.8 87 69.0
A10p28920 Brassica napus HOM05D000761 ORTHO05D006380 1.3e-28 129.8 92 67.4
C09p69270 Brassica napus HOM05D000761 ORTHO05D006380 1.3e-28 129.8 92 67.4
BolC9t59671H Brassica oleracea HOM05D000761 ORTHO05D006380 1.3e-28 129.8 92 67.4
BraA10t44939Z Brassica rapa HOM05D000761 ORTHO05D006380 1.3e-28 129.8 92 67.4
AUR62009696 Chenopodium quinoa HOM05D000088 ORTHO05D006380 1.3e-28 129.8 92 67.4
AUR62036250 Chenopodium quinoa HOM05D000088 ORTHO05D006380 1.3e-28 129.8 92 66.3
Psat5g155640 Pisum sativum HOM05D000088 ORTHO05D006380 1.3e-28 129.8 92 67.4
Sp6g20210 Schrenkiella parvula HOM05D000088 ORTHO05D006380 1.7e-28 129.4 87 66.7
Haze_24387 Corylus avellana HOM05D000088 ORTHO05D006380 2.2e-28 129.0 102 63.7
Sp6g35760 Schrenkiella parvula HOM05D000088 ORTHO05D006380 2.2e-28 129.0 87 70.1
Nn2g10968 Nelumbo nucifera HOM05D000088 ORTHO05D006380 2.8e-28 128.6 92 68.5
Medtr3g465590 Medicago truncatula HOM05D000088 ORTHO05D006380 3.7e-28 128.3 92 65.2
TWI36G1610 Tripterygium wilfordii HOM05D000088 ORTHO05D006380 4.8e-28 127.9 89 68.5
VMungo0540G0876 Vigna mungo HOM05D000088 ORTHO05D006380 4.8e-28 127.9 92 65.2
Sabra16G0174400 Salix brachista HOM05D000088 ORTHO05D006380 1.4e-27 126.3 84 70.2
Cc01_g14660 Coffea canephora HOM05D000088 ORTHO05D006380 1.8e-27 125.9 92 65.2
MD15G1018900 Malus domestica HOM05D000088 ORTHO05D006380 1.8e-27 125.9 83 67.5
TPR.G34746 Trifolium pratense HOM05D000088 ORTHO05D006380 1.8e-27 125.9 83 68.7
Hund05038 Selenicereus undatus HOM05D000088 ORTHO05D006380 2.4e-27 125.6 91 63.7
PSO017G7188 Papaver somniferum HOM05D000088 ORTHO05D006380 4.1e-27 124.8 92 62.0
arahy.Tifrunner.gnm1.ann1.HC1U3C Arachis hypogaea HOM05D000088 ORTHO05D006380 9.1e-27 123.6 82 69.5
PSO170G5275 Papaver somniferum HOM05D000088 ORTHO05D006380 1.6e-26 122.9 92 59.8
Aqoxy2G00821 Aquilegia oxysepala HOM05D000088 ORTHO05D006380 5.9e-26 120.9 92 60.9
AT5G07140 Arabidopsis thaliana HOM05D000088 ORTHO05D006380 5.9e-26 120.9 87 66.7
EL10Ac7g15891 Beta vulgaris HOM05D000088 ORTHO05D006380 1.0e-25 120.2 92 62.0
Carub.0006s0606 Capsella rubella HOM05D000088 ORTHO05D006380 1.0e-25 120.2 87 65.5
CARHR206000 Cardamine hirsuta HOM05D000088 ORTHO05D006380 1.3e-25 119.8 87 65.5
AL6G17330 Arabidopsis lyrata HOM05D000088 ORTHO05D006380 2.9e-25 118.6 87 64.4
Ah.08g215290 Amaranthus hybridus HOM05D000088 ORTHO05D006380 5.0e-25 117.9 102 57.8
CDE12G0743 Ceratophyllum demersum HOM05D000088 ORTHO05D006380 3.3e-24 115.2 91 61.5
CDE06G1759 Ceratophyllum demersum HOM05D000088 ORTHO05D006380 5.5e-24 114.4 91 60.4
SEGI_07216 Sequoiadendron giganteum HOM05D000088 ORTHO05D006380 2.8e-23 112.1 92 57.6
Zm00001eb396880 Zea mays HOM05D000088 ORTHO05D006380 2.8e-23 112.1 94 55.3
Zm00001eb013650 Zea mays HOM05D000088 ORTHO05D006380 4.7e-23 111.3 94 55.3
PSO801G0216 Papaver somniferum HOM05D000088 ORTHO05D006380 6.1e-23 110.9 92 56.5
HPP92_025108 Vanilla planifolia HOM05D000088 ORTHO05D006380 8.0e-23 110.5 92 54.3
Os03g0295600 Oryza sativa ssp. japonica HOM05D000088 ORTHO05D006380 1.0e-22 110.2 94 54.3
PSO339G6467 Papaver somniferum HOM05D000088 ORTHO05D006380 2.3e-22 109.0 92 55.4
Lsat_1_v5_gn_8_111061 Lactuca sativa HOM05D000088 ORTHO05D006380 7.5e-21 104.0 83 66.3
ATR0174G020 Amborella trichopoda HOM05D000088 ORTHO05D006380 1.4e-14 83.2 92 45.7
Mapoly0099s0014 Marchantia polymorpha HOM05D000088 ORTHO05D006380 7.3e-08 60.8 87 35.6
TPR.G2439 Trifolium pratense HOM05D000088 ORTHO05D000933 5.2e-06 54.7 72 37.5


User provided reference genes

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