Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 7.1e-47 190.3 97 100.0
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 1.9e-36 155.6 99 81.8
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 3.1e-34 148.3 95 82.1
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 3.8e-32 141.4 95 77.9
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 1.4e-23 112.8 99 58.6
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 1.4e-23 112.8 98 64.3
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 1.9e-23 112.5 98 62.2
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 9.3e-23 110.2 98 62.2
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 9.3e-23 110.2 94 60.6
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 1.2e-22 109.8 94 58.5
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 2.1e-22 109.0 95 58.9
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 4.6e-22 107.8 95 60.0
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 6.0e-22 107.5 98 57.1
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 1.0e-21 106.7 93 61.3
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 1.0e-21 106.7 94 60.6
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 1.3e-21 106.3 93 60.2
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 1.8e-21 105.9 88 60.2
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.3e-21 105.5 69 73.9
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.3e-21 105.5 69 73.9
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 3.9e-21 104.8 98 55.1
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 3.9e-21 104.8 88 60.2
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 6.7e-21 104.0 94 59.6
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 8.7e-21 103.6 93 58.1
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 1.1e-20 103.2 69 72.5
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 1.1e-20 103.2 92 58.7
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.1e-20 103.2 94 58.5
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 1.5e-20 102.8 96 58.3
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 1.9e-20 102.4 94 59.6
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 1.9e-20 102.4 88 60.2
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 1.9e-20 102.4 96 55.2
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 1.9e-20 102.4 98 56.1
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 1.9e-20 102.4 93 58.1
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 1.9e-20 102.4 93 58.1
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 2.5e-20 102.1 100 55.0
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 2.5e-20 102.1 97 56.7
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 2.5e-20 102.1 94 60.6
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.5e-20 102.1 66 72.7
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 2.5e-20 102.1 93 60.2
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 3.3e-20 101.7 89 59.6
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 4.3e-20 101.3 100 54.0
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 4.3e-20 101.3 93 57.0
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 4.3e-20 101.3 69 71.0
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 4.3e-20 101.3 95 55.8
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.3e-20 101.3 95 55.8
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.3e-20 101.3 95 55.8
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.3e-20 101.3 95 55.8
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 4.3e-20 101.3 71 67.6
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 4.3e-20 101.3 92 58.7
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 5.6e-20 100.9 90 56.7
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 5.6e-20 100.9 91 58.2
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 7.4e-20 100.5 68 70.6
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 7.4e-20 100.5 87 60.9
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 7.4e-20 100.5 90 57.8
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 9.6e-20 100.1 98 57.1
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 9.6e-20 100.1 92 58.7
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 1.3e-19 99.8 88 60.2
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 1.6e-19 99.4 93 53.8
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.6e-19 99.4 98 55.1
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 2.1e-19 99.0 94 58.5
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 2.1e-19 99.0 94 58.5
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 2.1e-19 99.0 88 60.2
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 2.8e-19 98.6 77 63.6
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 2.8e-19 98.6 69 66.7
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 3.7e-19 98.2 93 54.8
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 3.7e-19 98.2 70 67.1
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 4.8e-19 97.8 70 65.7
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.8e-19 97.8 96 56.2
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 6.2e-19 97.4 94 57.4
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 8.2e-19 97.1 98 54.1
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 8.2e-19 97.1 92 57.6
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 8.2e-19 97.1 94 57.4
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 8.2e-19 97.1 86 57.0
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 1.1e-18 96.7 88 56.8
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 1.4e-18 96.3 94 53.2
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.4e-18 96.3 75 61.3
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 1.4e-18 96.3 94 56.4
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 1.8e-18 95.9 87 55.2
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 1.8e-18 95.9 91 53.8
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 1.8e-18 95.9 87 55.2
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.8e-18 95.9 64 68.8
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 2.4e-18 95.5 93 58.1
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 2.4e-18 95.5 96 56.2
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 2.4e-18 95.5 94 54.3
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 2.4e-18 95.5 71 66.2
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 3.1e-18 95.1 72 63.9
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 4.0e-18 94.7 90 56.7
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 5.3e-18 94.4 88 55.7
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 6.9e-18 94.0 90 53.3
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 6.9e-18 94.0 95 52.6
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 9.0e-18 93.6 72 62.5
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 9.0e-18 93.6 80 58.8
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 9.0e-18 93.6 66 69.7
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 1.2e-17 93.2 75 60.0
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 1.5e-17 92.8 94 53.2
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.5e-17 92.8 66 63.6
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 2.0e-17 92.4 82 58.5
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 2.6e-17 92.0 92 55.4
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 3.4e-17 91.7 93 53.8
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 3.4e-17 91.7 93 53.8
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 3.4e-17 91.7 93 53.8
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 4.5e-17 91.3 94 55.3
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 4.5e-17 91.3 93 53.8
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 5.8e-17 90.9 100 52.0
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 5.8e-17 90.9 94 51.1
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 1.0e-16 90.1 86 53.5
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 1.7e-16 89.4 90 53.3
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 1.7e-16 89.4 93 53.8
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 1.7e-16 89.4 93 53.8
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 2.9e-16 88.6 71 57.7
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 3.8e-16 88.2 66 63.6
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 4.9e-16 87.8 100 46.0
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.1e-15 86.7 61 65.6
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 7.1e-15 84.0 90 48.9
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 7.1e-15 84.0 90 48.9
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 7.1e-15 84.0 90 48.9
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 7.9e-14 80.5 57 68.4
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 3.3e-12 75.1 56 60.7
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 9.7e-12 73.6 52 69.2
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 9.7e-12 73.6 52 69.2
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 2.8e-11 72.0 61 55.7
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 4.8e-11 71.2 58 58.6
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 6.3e-11 70.9 70 54.3
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 8.2e-11 70.5 58 56.9
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 1.1e-10 70.1 85 47.1
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 1.4e-10 69.7 57 57.9
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.4e-10 69.7 84 50.0
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 1.4e-10 69.7 62 56.5
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 2.4e-10 68.9 74 51.4
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 2.4e-10 68.9 69 55.1
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 3.1e-10 68.6 70 54.3
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 1.2e-09 66.6 51 60.8
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 1.5e-09 66.2 69 53.6
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 2.0e-09 65.9 57 57.9
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 4.5e-09 64.7 66 51.5
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 1.0e-08 63.5 72 48.6
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 1.3e-08 63.2 68 51.5
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 1.3e-08 63.2 67 50.7
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 5.0e-08 61.2 75 46.7
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 6.5e-08 60.8 54 53.7
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 1.1e-07 60.1 46 60.9
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 2.5e-07 58.9 91 42.9
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 1.6e-06 56.2 48 54.2
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 2.1e-06 55.8 64 45.3


User provided reference genes

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