Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0502261 Helianthus annuus HOM05D006409 ORTHO05D008250 5.6e-141 504.6 322 100.0
HanXRQChr09g0270151 Helianthus annuus HOM05D006409 ORTHO05D008250 1.7e-100 370.2 309 68.3
ECA232G2526 Erigeron canadensis HOM05D006409 ORTHO05D008250 2.7e-82 309.7 312 63.1
Lsat_1_v5_gn_4_110201 Lactuca sativa HOM05D006409 ORTHO05D008250 1.9e-56 223.8 315 49.5
Ciclev10020474m.g Citrus clementina HOM05D006409 ORTHO05D008250 3.4e-45 186.4 373 38.3
TAR629G2567 Trochodendron aralioides HOM05D006409 ORTHO05D008250 5.8e-45 185.7 373 37.8
Cfa019299 Carpinus fangiana HOM05D006409 ORTHO05D008250 1.3e-44 184.5 376 45.2
Actinidia09250 Actinidia chinensis HOM05D006409 ORTHO05D008250 4.9e-44 182.6 354 38.4
Prupe.5G201100 Prunus persica HOM05D006409 ORTHO05D008250 1.1e-43 181.4 368 40.5
PGR083G0341 Punica granatum HOM05D006409 ORTHO05D008250 1.9e-43 180.6 370 36.8
Dinv38786 Davidia involucrata HOM05D006409 ORTHO05D008250 5.4e-43 179.1 363 40.5
QL10p018676 Quercus lobata HOM05D006409 ORTHO05D008250 7.1e-43 178.7 363 39.4
MD14G1208800 Malus domestica HOM05D006409 ORTHO05D008250 1.2e-42 177.9 361 37.4
Sabra15G0078400 Salix brachista HOM05D006409 ORTHO05D008250 1.7e-41 174.1 345 38.8
CiPaw.11G050000 Carya illinoinensis HOM05D006409 ORTHO05D008250 2.3e-41 173.7 367 40.3
Potri.015G048900 Populus trichocarpa HOM05D006409 ORTHO05D008250 3.0e-41 173.3 369 39.8
Haze_07680 Corylus avellana HOM05D006409 ORTHO05D008250 6.6e-41 172.2 303 43.2
Oeu014392.1 Olea europaea HOM05D006409 ORTHO05D006262 6.6e-41 172.2 367 36.2
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.5e-40 171.0 362 40.3
Rhsim08G0148500 Rhododendron simsii HOM05D006409 ORTHO05D008250 4.3e-40 169.5 356 39.6
Duzib084G0027 Durio zibethinus HOM05D006409 ORTHO05D008250 5.6e-40 169.1 372 37.6
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 5.6e-40 169.1 372 40.1
Nitab4.5_0001961g0070 Nicotiana tabacum HOM05D006409 ORTHO05D008250 1.6e-39 167.5 355 35.5
Lj4g0024886 Lotus japonicus HOM05D006409 ORTHO05D008250 6.2e-39 165.6 356 37.1
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 1.4e-38 164.5 360 36.4
Thecc.03G097200 Theobroma cacao HOM05D006409 ORTHO05D008250 1.8e-38 164.1 353 36.5
Eucgr.B00571 Eucalyptus grandis HOM05D006409 ORTHO05D008250 3.1e-38 163.3 359 38.4
ClCG04G011930 Citrullus lanatus HOM05D006409 ORTHO05D008250 4.0e-38 162.9 360 42.8
DCAR_026015 Daucus carota HOM05D006409 ORTHO05D008250 5.8e-37 159.1 343 35.9
Gohir.D12G183500 Gossypium hirsutum HOM05D006409 ORTHO05D008250 5.8e-37 159.1 372 41.1
GSVIVG01007923001 Vitis vinifera HOM05D006409 ORTHO05D008250 5.8e-37 159.1 375 39.5
Glyma.05G022800 Glycine max HOM05D006409 ORTHO05D008250 7.6e-37 158.7 363 35.8
MSTRG.22971 Avicennia marina HOM05D006409 ORTHO05D008250 1.3e-36 157.9 353 33.1
Manes.14G084000 Manihot esculenta HOM05D006409 ORTHO05D008250 1.7e-36 157.5 359 38.4
Peaxi162Scf00106g00081 Petunia axillaris HOM05D006409 ORTHO05D008250 1.7e-36 157.5 357 42.3
Glyma.17G076800 Glycine max HOM05D006409 ORTHO05D008250 2.9e-36 156.8 363 34.7
Cc00_g02320 Coffea canephora HOM05D006409 ORTHO05D008250 6.4e-36 155.6 359 37.3
CANSAT80G1113 Cannabis sativa HOM05D006409 ORTHO05D008250 1.1e-35 154.8 362 35.1
FvH4_5g14277 Fragaria vesca HOM05D006409 ORTHO05D008250 1.4e-35 154.5 339 39.2
PSO302G0195 Papaver somniferum HOM05D006409 ORTHO05D008250 3.2e-35 153.3 342 35.7
Sp6g35060 Schrenkiella parvula HOM05D006409 ORTHO05D008250 4.2e-35 152.9 364 34.1
Sopen12g016610 Solanum pennellii HOM05D006409 ORTHO05D008250 5.4e-35 152.5 361 33.8
VMungo1215G3198 Vigna mungo HOM05D006409 ORTHO05D008250 7.1e-35 152.1 358 33.5
PSO017G5610 Papaver somniferum HOM05D006409 ORTHO05D008250 1.2e-34 151.4 345 36.5
MELO3C002015.2 Cucumis melo HOM05D006409 ORTHO05D008250 2.7e-34 150.2 356 36.5
CARHR205310 Cardamine hirsuta HOM05D006409 ORTHO05D008250 3.5e-34 149.8 353 32.9
RcHm_v2.0_Chr7g0182601 Rosa chinensis HOM05D006409 ORTHO05D008250 3.5e-34 149.8 369 37.1
vmacro17591 Vaccinium macrocarpon HOM05D006409 ORTHO05D008250 3.5e-34 149.8 283 39.9
Nitab4.5_0005160g0050 Nicotiana tabacum HOM05D006409 ORTHO05D008250 4.6e-34 149.4 360 34.4
CANSAT80G0413 Cannabis sativa HOM05D006409 ORTHO05D008250 7.8e-34 148.7 355 41.4
Carub.0008s2186 Capsella rubella HOM05D006409 ORTHO05D008250 7.8e-34 148.7 357 33.1
COL.COLO4_22753 Corchorus olitorius HOM05D006409 ORTHO05D008250 7.8e-34 148.7 295 41.0
Psat4g048440 Pisum sativum HOM05D006409 ORTHO05D008250 7.8e-34 148.7 274 36.9
Lalb_Chr13g0302951 Lupinus albus HOM05D006409 ORTHO05D008250 1.3e-33 147.9 251 39.0
PSO478G4763 Papaver somniferum HOM05D006409 ORTHO05D008250 1.3e-33 147.9 345 35.9
Gorai.008G196800 Gossypium raimondii HOM05D006409 ORTHO05D008250 1.7e-33 147.5 358 40.5
FAN08G0388 Fragaria x ananassa HOM05D006409 ORTHO05D008250 2.3e-33 147.1 291 42.3
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 3.0e-33 146.7 361 34.1
Phvul.L001604 Phaseolus vulgaris HOM05D006409 ORTHO05D008250 3.0e-33 146.7 338 33.1
THA.LOC104818336 Tarenaya hassleriana HOM05D006409 ORTHO05D008250 3.0e-33 146.7 368 34.5
Medtr4g109330 Medicago truncatula HOM05D006409 ORTHO05D008250 3.9e-33 146.4 317 36.9
AL6G18220 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 1.1e-32 144.8 356 33.4
PGSC0003DMG400012806 Solanum tuberosum HOM05D006409 ORTHO05D008250 1.1e-32 144.8 362 31.5
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 1.5e-32 144.4 360 32.5
CsaV3_1G005860 Cucumis sativus L. HOM05D006409 ORTHO05D008250 1.5e-32 144.4 360 35.8
AT5G07890 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 3.3e-32 143.3 356 33.1
Atru.chr9.377 Acer truncatum HOM05D006409 ORTHO05D008250 9.6e-32 141.7 295 40.7
C03p03950 Brassica napus HOM05D006409 ORTHO05D008250 9.6e-32 141.7 369 31.7
BolC3t12932H Brassica oleracea HOM05D006409 ORTHO05D008250 9.6e-32 141.7 369 31.7
CAN.G172.10 Capsicum annuum HOM05D006409 ORTHO05D008250 1.3e-31 141.4 342 33.0
Nn4g23374 Nelumbo nucifera HOM05D006409 ORTHO05D008250 2.1e-31 140.6 309 35.0
Cpa.g.sc94.9 Carica papaya HOM05D006409 ORTHO05D008250 2.8e-31 140.2 348 32.5
Migut.I00315 Erythranthe guttata HOM05D006409 ORTHO05D008250 2.8e-31 140.2 368 33.7
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 3.6e-31 139.8 357 34.2
BolC9t59643H Brassica oleracea HOM05D006409 ORTHO05D008250 4.8e-31 139.4 358 33.8
Actinidia04843 Actinidia chinensis HOM05D006409 ORTHO05D008250 6.2e-31 139.0 211 44.5
Gohir.A12G180800 Gossypium hirsutum HOM05D006409 ORTHO05D008250 6.2e-31 139.0 372 38.2
Solyc12g036300.3 Solanum lycopersicum HOM05D006409 ORTHO05D008250 1.4e-30 137.9 358 32.1
TWI81G1094 Tripterygium wilfordii HOM05D006409 ORTHO05D008250 3.1e-30 136.7 371 36.7
Sed0008489 Sechium edule HOM05D006409 ORTHO05D008250 5.3e-30 136.0 359 43.5
BcaB01g05645 Brassica carinata HOM05D006409 ORTHO05D008250 1.5e-29 134.4 362 31.8
arahy.Tifrunner.gnm1.ann1.4D2E4C Arachis hypogaea HOM05D006409 ORTHO05D008250 2.0e-29 134.0 353 32.6
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 2.6e-29 133.7 350 35.4
Carub.0006s0678 Capsella rubella HOM05D006409 ORTHO05D008250 2.6e-29 133.7 356 34.6
BcaNung06903 Brassica carinata HOM05D006409 ORTHO05D008250 7.6e-29 132.1 354 33.1
AL8G37860 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 2.2e-28 130.6 356 32.9
AT5G61200 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 4.9e-28 129.4 347 34.3
arahy.Tifrunner.gnm1.ann1.PS4SMH Arachis hypogaea HOM05D006409 ORTHO05D008250 8.4e-28 128.6 353 31.2
TPR.G2042 Trifolium pratense HOM05D006409 ORTHO05D008250 1.9e-27 127.5 359 32.9
A03p03510 Brassica napus HOM05D006409 ORTHO05D008250 5.4e-27 125.9 378 29.9
BraA03t09701Z Brassica rapa HOM05D006409 ORTHO05D008250 5.4e-27 125.9 378 29.9
Ah.02g113920 Amaranthus hybridus HOM05D006409 ORTHO05D008250 7.9e-26 122.1 315 34.3
SalBow5G3762 Salvia bowleyana HOM05D006409 ORTHO05D008250 1.8e-25 120.9 262 35.5
Zm00001eb108440 Zea mays HOM05D006409 ORTHO05D008250 1.8e-25 120.9 250 36.4
Thhalv10013673m.g Eutrema salsugineum HOM05D006409 ORTHO05D008250 3.9e-25 119.8 363 31.1
Os07g0598700 Oryza sativa ssp. japonica HOM05D006409 ORTHO05D008250 5.1e-25 119.4 257 35.8
C04p51620 Brassica napus HOM05D006409 ORTHO05D008250 6.7e-25 119.0 265 34.3
Lj5A105T60 Lonicera japonica HOM05D006409 ORTHO05D008250 1.3e-23 114.8 215 38.1
Sc04g0003080 Simmondsia chinensis HOM05D006409 ORTHO05D008250 1.6e-23 114.4 339 33.6
CDE06G0998 Ceratophyllum demersum HOM05D006409 ORTHO05D008250 4.0e-22 109.8 336 28.0
BcaC02g08700 Brassica carinata HOM05D006409 ORTHO05D008250 6.9e-22 109.0 273 32.2
ATR0064G033 Amborella trichopoda HOM05D006409 ORTHO05D008250 4.5e-21 106.3 374 29.1
AUR62021594 Chenopodium quinoa HOM05D006409 ORTHO05D008250 5.8e-21 105.9 347 30.0
EL10Ac5g11100 Beta vulgaris HOM05D006409 ORTHO05D008250 3.8e-20 103.2 312 32.1
Ca_21789_v3 Cicer arietinum L. HOM05D006409 ORTHO05D008250 1.1e-19 101.7 231 34.6
Hund02605 Selenicereus undatus HOM05D006409 ORTHO05D008250 3.9e-17 93.2 220 36.8
AUR62008498 Chenopodium quinoa HOM05D006409 ORTHO05D008250 6.2e-15 85.9 365 28.5
BcaC02g08698 Brassica carinata HOM05D006409 ORTHO05D008250 2.4e-14 84.0 268 29.1
Actinidia12838 Actinidia chinensis HOM05D006409 ORTHO05D008250 3.8e-12 76.6 81 53.1
BcaC02g08699 Brassica carinata HOM05D006409 ORTHO05D008250 1.9e-11 74.3 150 34.7
Duzib068G0538 Durio zibethinus HOM05D006409 ORTHO05D008250 2.5e-11 73.9 184 35.3
C04p51590 Brassica napus HOM05D006409 ORTHO05D008250 5.5e-11 72.8 86 41.9
arahy.Tifrunner.gnm1.ann1.LPT8KM Arachis hypogaea HOM05D006409 ORTHO05D008250 7.1e-11 72.4 70 55.7
C04p51600 Brassica napus HOM05D006409 ORTHO05D008250 3.5e-10 70.1 77 50.6
SGA_v2.0_scaffold25G10967 Striga asiatica HOM05D006409 ORTHO05D008250 6.7e-09 65.9 295 28.8


User provided reference genes

Program Settings