Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 4.8e-82 307.8 153 100.0
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 6.5e-63 244.2 136 90.4
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 1.0e-52 210.3 133 80.5
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 5.7e-51 204.5 133 78.9
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 3.0e-36 155.6 140 60.0
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 2.0e-35 152.9 137 60.6
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 3.4e-35 152.1 134 61.9
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 5.7e-35 151.4 134 61.2
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 7.5e-35 151.0 134 61.9
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 9.8e-35 150.6 134 60.4
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 9.8e-35 150.6 101 73.3
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 9.8e-35 150.6 134 62.7
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 1.7e-34 149.8 145 59.3
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 4.9e-34 148.3 134 60.4
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 6.4e-34 147.9 134 60.4
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 1.4e-33 146.7 137 58.4
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 7.0e-33 144.4 134 58.2
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 2.0e-32 142.9 149 51.0
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 3.5e-32 142.1 140 55.7
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 7.8e-32 141.0 140 54.3
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 3.9e-31 138.7 141 53.9
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 5.0e-31 138.3 142 51.4
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 6.6e-31 137.9 134 55.2
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 6.6e-31 137.9 140 53.6
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 8.6e-31 137.5 94 72.3
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 8.6e-31 137.5 94 72.3
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 1.9e-30 136.3 134 56.7
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 1.9e-30 136.3 149 50.3
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 2.5e-30 136.0 94 71.3
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 3.3e-30 135.6 144 50.7
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 3.3e-30 135.6 111 60.4
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 7.3e-30 134.4 145 49.7
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 2.8e-29 132.5 145 49.7
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 3.6e-29 132.1 137 52.6
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 1.0e-28 130.6 133 49.6
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 1.4e-28 130.2 137 50.4
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 1.4e-28 130.2 134 53.0
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 1.8e-28 129.8 149 49.0
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 2.3e-28 129.4 94 64.9
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 5.2e-28 128.3 141 48.9
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 6.8e-28 127.9 137 51.8
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 6.8e-28 127.9 134 51.5
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.2e-27 127.1 89 69.7
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 1.5e-27 126.7 89 70.8
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 2.0e-27 126.3 93 65.6
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.0e-27 126.3 134 50.7
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 2.0e-27 126.3 133 51.9
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 2.6e-27 125.9 133 52.6
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 3.4e-27 125.6 140 47.9
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 5.8e-27 124.8 139 52.5
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 5.8e-27 124.8 136 50.0
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 7.5e-27 124.4 103 60.2
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 7.5e-27 124.4 103 59.2
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 9.8e-27 124.0 103 60.2
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 9.8e-27 124.0 103 60.2
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 9.8e-27 124.0 115 56.5
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 1.3e-26 123.6 133 49.6
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 1.7e-26 123.2 103 59.2
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 1.7e-26 123.2 103 59.2
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 1.7e-26 123.2 103 59.2
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 1.7e-26 123.2 113 56.6
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 1.7e-26 123.2 95 63.2
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 2.2e-26 122.9 99 61.6
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 2.2e-26 122.9 135 50.4
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 2.2e-26 122.9 94 61.7
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 2.9e-26 122.5 99 59.6
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 2.9e-26 122.5 88 67.0
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 2.9e-26 122.5 136 50.7
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 6.4e-26 121.3 95 62.1
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 8.3e-26 120.9 103 57.3
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 8.3e-26 120.9 89 65.2
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 1.1e-25 120.6 106 56.6
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 1.9e-25 119.8 132 48.5
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 3.2e-25 119.0 88 64.8
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 3.2e-25 119.0 88 63.6
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 4.1e-25 118.6 81 70.4
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 5.4e-25 118.2 96 58.3
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 5.4e-25 118.2 96 58.3
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 5.4e-25 118.2 96 58.3
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 9.2e-25 117.5 89 61.8
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 9.2e-25 117.5 89 61.8
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 9.2e-25 117.5 89 65.2
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.2e-24 117.1 89 64.0
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 1.6e-24 116.7 133 48.1
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 2.0e-24 116.3 105 55.2
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 2.7e-24 115.9 133 46.6
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 3.5e-24 115.5 86 64.0
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 4.6e-24 115.2 137 48.2
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 4.6e-24 115.2 137 48.2
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 4.6e-24 115.2 137 48.2
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 4.6e-24 115.2 137 48.2
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 6.0e-24 114.8 89 64.0
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 7.8e-24 114.4 134 48.5
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 1.0e-23 114.0 100 57.0
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 1.3e-23 113.6 133 47.4
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.3e-23 113.6 133 45.9
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.3e-23 113.6 133 45.9
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.3e-23 113.6 137 48.2
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 1.7e-23 113.2 90 61.1
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 1.1e-22 110.5 88 60.2
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 3.3e-22 109.0 85 63.5
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 3.3e-22 109.0 69 76.8
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 3.3e-22 109.0 88 61.4
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 4.3e-22 108.6 85 61.2
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 5.4e-17 91.7 90 53.3
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 1.5e-14 83.6 111 45.0
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 1.5e-14 83.6 111 45.0
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 1.5e-14 83.6 111 45.0
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 1.5e-14 83.6 111 45.0
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 1.5e-14 83.6 111 45.0
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 4.3e-14 82.0 100 42.0
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 4.3e-14 82.0 51 72.5
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 5.6e-14 81.6 51 72.5
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 5.6e-14 81.6 55 67.3
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 5.6e-14 81.6 51 72.5
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 7.3e-14 81.3 59 69.5
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 7.3e-14 81.3 52 71.2
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 9.5e-14 80.9 51 72.5
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 1.2e-13 80.5 99 41.4
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 1.2e-13 80.5 88 50.0
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 1.6e-13 80.1 93 43.0
HanXRQChr05g0139891 Helianthus annuus HOM05D001733 ORTHO05D001882 1.2e-11 73.9 42 85.7
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.5e-11 73.6 56 60.7
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 2.6e-11 72.8 56 60.7
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 6.0e-08 61.6 71 49.3
arahy.Tifrunner.gnm1.ann1.897E8M Arachis hypogaea HOM05D001733 ORTHO05D001882 7.8e-08 61.2 100 36.0
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 1.0e-07 60.8 43 65.1
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 1.7e-07 60.1 47 61.7
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 3.0e-07 59.3 43 62.8
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 6.6e-07 58.2 47 55.3
FAN23G0919 Fragaria x ananassa HOM05D001733 ORTHO05D001882 8.6e-07 57.8 94 38.3
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 1.5e-06 57.0 48 56.2
Mapoly0051s0114 Marchantia polymorpha HOM05D052641 ORTHO05D001882 3.3e-06 55.8 72 41.7


User provided reference genes

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