Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 1.2e-91 339.7 162 100.0
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 1.0e-58 230.3 137 82.5
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 3.0e-58 228.8 139 79.9
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 5.7e-57 224.6 137 78.1
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.5e-46 189.9 142 63.4
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.5e-46 189.9 142 63.4
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 1.0e-45 187.2 137 68.6
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 2.2e-45 186.0 140 66.4
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 2.2e-45 186.0 138 68.8
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 2.9e-45 185.7 136 68.4
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 1.1e-44 183.7 142 64.8
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 1.4e-44 183.3 131 67.9
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 4.2e-44 181.8 139 66.9
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 4.2e-44 181.8 131 67.2
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 5.5e-44 181.4 139 66.9
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 1.6e-43 179.9 131 67.2
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 2.1e-43 179.5 136 65.4
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 2.1e-43 179.5 143 64.3
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 2.7e-43 179.1 143 63.6
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 2.7e-43 179.1 131 67.2
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 4.6e-43 178.3 139 66.2
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 4.6e-43 178.3 140 66.4
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 6.1e-43 177.9 139 66.2
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 6.1e-43 177.9 141 66.0
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 7.9e-43 177.6 136 66.2
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 1.4e-42 176.8 139 66.2
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 2.3e-42 176.0 140 65.7
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 3.0e-42 175.6 139 66.9
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 3.0e-42 175.6 138 67.4
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 3.0e-42 175.6 140 66.4
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 3.9e-42 175.3 139 63.3
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 5.1e-42 174.9 139 65.5
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 6.7e-42 174.5 139 64.7
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 6.7e-42 174.5 139 62.6
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 8.8e-42 174.1 152 59.9
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 8.8e-42 174.1 146 60.3
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 8.8e-42 174.1 146 60.3
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 1.1e-41 173.7 146 60.3
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 1.1e-41 173.7 146 60.3
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 1.1e-41 173.7 146 60.3
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 1.1e-41 173.7 140 65.0
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 1.5e-41 173.3 147 59.2
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 1.5e-41 173.3 147 59.2
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 1.5e-41 173.3 147 59.2
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 1.5e-41 173.3 146 62.3
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 1.5e-41 173.3 128 66.4
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 1.5e-41 173.3 151 57.6
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 1.5e-41 173.3 137 65.7
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 2.0e-41 172.9 142 62.7
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 2.5e-41 172.6 131 64.9
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 3.3e-41 172.2 147 59.9
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 3.3e-41 172.2 147 59.9
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 4.3e-41 171.8 138 63.8
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 5.7e-41 171.4 102 75.5
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 5.7e-41 171.4 140 65.7
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 7.4e-41 171.0 140 65.0
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 9.7e-41 170.6 133 63.2
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 1.3e-40 170.2 149 58.4
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 1.3e-40 170.2 132 62.9
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 1.3e-40 170.2 135 67.4
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 1.3e-40 170.2 141 63.1
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 1.3e-40 170.2 102 74.5
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 2.2e-40 169.5 140 61.4
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 2.2e-40 169.5 140 65.0
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 2.8e-40 169.1 103 79.6
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 3.7e-40 168.7 133 61.7
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 4.8e-40 168.3 100 75.0
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 6.3e-40 167.9 149 59.1
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 6.3e-40 167.9 149 59.1
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 1.1e-39 167.2 140 61.4
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 1.4e-39 166.8 152 57.2
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 1.4e-39 166.8 138 63.0
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 1.8e-39 166.4 150 56.0
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 2.4e-39 166.0 140 60.7
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 3.1e-39 165.6 138 60.9
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 3.1e-39 165.6 141 61.0
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 5.3e-39 164.9 145 60.7
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 6.9e-39 164.5 148 56.8
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 2.0e-38 162.9 139 60.4
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 2.6e-38 162.5 148 54.7
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 2.6e-38 162.5 141 62.4
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 5.9e-38 161.4 143 59.4
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 7.7e-38 161.0 105 72.4
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 1.3e-37 160.2 143 59.4
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 1.3e-37 160.2 149 56.4
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 1.3e-37 160.2 139 60.4
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 1.7e-37 159.8 138 61.6
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 2.2e-37 159.5 135 62.2
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 2.2e-37 159.5 135 62.2
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 5.0e-37 158.3 136 61.0
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 6.5e-37 157.9 105 71.4
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 6.5e-37 157.9 138 58.7
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 8.5e-37 157.5 136 61.0
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 1.4e-36 156.8 102 72.5
Actinidia37997 Actinidia chinensis HOM05D006275 ORTHO05D007839 2.5e-36 156.0 125 62.4
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 4.2e-36 155.2 141 59.6
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 7.2e-36 154.5 133 60.2
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 7.2e-36 154.5 133 60.2
Lj5g0023115 Lotus japonicus HOM05D006275 ORTHO05D007839 9.4e-36 154.1 140 57.1
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 3.6e-35 152.1 103 71.8
Rhsim07G0241500 Rhododendron simsii HOM05D006275 ORTHO05D007839 6.1e-35 151.4 141 56.7
RhsimUnG0236400 Rhododendron simsii HOM05D006275 ORTHO05D007839 6.1e-35 151.4 141 56.7
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 7.9e-35 151.0 104 65.4
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 1.0e-34 150.6 117 63.2
Psat6g009240 Pisum sativum HOM05D006275 ORTHO05D007839 1.5e-33 146.7 141 56.7
TPR.G20152 Trifolium pratense HOM05D006275 ORTHO05D007839 3.7e-32 142.1 133 54.9
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 4.8e-32 141.7 106 64.2
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 4.5e-30 135.2 103 67.0
Mapoly0051s0056 Marchantia polymorpha HOM05D006275 ORTHO05D007839 4.5e-30 135.2 102 59.8
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 7.7e-30 134.4 106 60.4
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 2.2e-29 132.9 136 49.3
AagrBONN_evm.TU.Sc2ySwM_368.2624 Anthoceros agrestis HOM05D006275 ORTHO05D007839 3.2e-28 129.0 103 58.3
CBR_g52135 Chara braunii HOM05D006275 ORTHO05D007839 7.2e-28 127.9 103 59.2
SMO117G0016 Selaginella moellendorffii HOM05D006275 ORTHO05D007839 2.0e-25 119.8 102 52.0
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 1.7e-24 116.7 79 72.2
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 1.8e-23 113.2 78 66.7
SEGI_04934 Sequoiadendron giganteum HOM05D006275 ORTHO05D007839 2.4e-23 112.8 102 51.0
Os01g0633000 Oryza sativa ssp. japonica HOM05D006275 ORTHO05D007839 2.0e-22 109.8 134 43.3
Zm00001eb159080 Zea mays HOM05D006275 ORTHO05D007839 4.5e-22 108.6 104 50.0
BcaC09g48250 Brassica carinata HOM05D006275 ORTHO05D007839 1.8e-18 96.7 54 74.1
Cre08.g365400 Chlamydomonas reinhardtii HOM05D006275 ORTHO05D007839 1.5e-17 93.6 105 46.7
MCO12G376 Micromonas commoda HOM05D006275 ORTHO05D007839 1.5e-17 93.6 72 52.8
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 2.0e-14 83.2 61 68.9
Gorai.010G176600 Gossypium raimondii HOM05D006275 ORTHO05D007839 1.3e-13 80.5 75 57.3
Gohir.D12G058400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 2.9e-13 79.3 74 56.8
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 2.0e-09 66.6 54 55.6
Sabra05G0177600 Salix brachista HOM05D006275 ORTHO05D007839 1.4e-07 60.5 61 45.9


User provided reference genes

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