Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 2.4e-125 452.2 230 100.0
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 2.4e-117 425.6 225 93.3
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 6.9e-109 397.5 227 85.0
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 3.6e-97 358.6 219 81.3
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 3.3e-95 352.1 225 77.3
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 4.4e-95 351.7 200 87.0
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 4.8e-94 348.2 217 78.8
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 8.2e-94 347.4 217 77.9
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 1.1e-93 347.1 224 75.4
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 1.5e-92 343.2 224 76.3
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 1.0e-91 340.5 225 73.8
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 1.0e-91 340.5 216 76.9
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 1.0e-91 340.5 227 74.4
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.2e-91 339.3 226 76.1
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 2.2e-91 339.3 217 75.6
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 3.8e-91 338.6 216 76.4
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 5.0e-91 338.2 224 74.6
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 6.5e-91 337.8 217 77.9
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 8.5e-91 337.4 224 74.1
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 8.5e-91 337.4 226 75.2
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.9e-90 336.3 224 74.1
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.9e-90 336.3 224 74.1
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 4.2e-90 335.1 217 75.1
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 9.4e-90 334.0 224 73.7
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.2e-89 333.6 217 74.7
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 1.6e-89 333.2 225 74.2
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 6.1e-89 331.3 217 74.2
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 6.1e-89 331.3 228 71.5
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.4e-88 330.1 223 74.0
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.4e-88 330.1 224 73.7
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 1.8e-88 329.7 225 72.9
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 2.3e-88 329.3 225 73.8
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 3.9e-88 328.6 216 71.8
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 8.8e-88 327.4 225 74.2
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 8.8e-88 327.4 225 72.4
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 1.1e-87 327.0 224 72.3
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 1.5e-87 326.6 215 74.4
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 1.5e-87 326.6 221 71.0
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 2.0e-87 326.2 219 71.2
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 3.3e-87 325.5 226 73.5
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 7.4e-87 324.3 222 74.8
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 1.3e-86 323.6 219 69.4
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 2.2e-86 322.8 216 70.4
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 2.2e-86 322.8 225 70.2
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 2.8e-86 322.4 213 75.6
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 4.8e-86 321.6 220 72.7
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 4.8e-86 321.6 220 72.7
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 8.2e-86 320.9 214 74.3
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 1.4e-85 320.1 216 71.3
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.8e-85 319.7 223 69.5
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 3.1e-85 318.9 225 68.4
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 5.3e-85 318.2 217 70.0
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 7.0e-85 317.8 220 71.4
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 9.1e-85 317.4 217 72.8
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 9.1e-85 317.4 229 70.3
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 9.1e-85 317.4 228 68.9
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 1.2e-84 317.0 219 69.9
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 1.2e-84 317.0 225 68.4
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.2e-84 317.0 217 68.7
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 1.6e-84 316.6 224 68.8
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.6e-84 316.6 228 68.0
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 2.0e-84 316.2 217 73.3
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 2.0e-84 316.2 220 71.8
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 7.7e-84 314.3 220 68.6
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 7.7e-84 314.3 223 68.6
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.3e-83 313.5 218 72.5
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 2.9e-83 312.4 215 71.6
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.9e-83 312.4 221 68.8
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 8.5e-83 310.8 227 66.1
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 9.4e-82 307.4 227 67.8
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 1.2e-81 307.0 219 66.2
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.6e-81 306.6 227 68.7
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.6e-81 306.6 227 68.3
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 2.1e-81 306.2 222 67.6
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 2.7e-81 305.8 230 67.4
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 4.7e-81 305.1 254 62.2
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 1.0e-80 303.9 227 67.0
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 3.0e-80 302.4 220 67.7
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 4.0e-80 302.0 202 74.8
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 5.2e-80 301.6 219 65.3
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 8.8e-80 300.8 222 68.5
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 7.5e-79 297.7 249 62.7
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 9.7e-79 297.4 227 66.1
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.4e-77 293.5 186 77.4
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 2.4e-77 292.7 227 64.3
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.4e-77 292.7 245 62.0
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 3.1e-77 292.4 227 64.3
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 3.1e-77 292.4 227 64.3
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 2.7e-76 289.3 227 63.4
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 2.7e-76 289.3 227 63.4
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.7e-76 289.3 227 64.3
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 4.5e-76 288.5 219 63.9
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 7.7e-76 287.7 227 63.9
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.3e-75 287.0 208 70.2
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.3e-75 287.0 208 70.2
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 2.9e-75 285.8 226 61.9
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 5.0e-75 285.0 220 66.4
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.1e-74 283.9 226 62.8
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 1.1e-74 283.9 283 56.5
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.5e-74 283.5 226 61.5
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.5e-74 282.7 227 61.7
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 5.5e-74 281.6 226 62.4
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 9.4e-74 280.8 226 60.2
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 1.2e-73 280.4 189 71.4
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 1.6e-73 280.0 212 65.1
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 2.7e-73 279.3 186 74.2
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 3.6e-73 278.9 222 62.6
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 3.6e-73 278.9 193 68.4
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 4.7e-73 278.5 214 65.9
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 4.7e-73 278.5 222 62.6
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.7e-73 278.5 218 64.7
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 4.7e-73 278.5 225 66.2
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.0e-72 277.3 216 67.6
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 2.3e-72 276.2 227 60.4
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 2.3e-72 276.2 227 60.4
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 3.0e-72 275.8 227 60.4
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 3.0e-72 275.8 222 61.7
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 3.0e-72 275.8 227 60.4
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 3.0e-72 275.8 227 60.4
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 1.5e-71 273.5 228 62.3
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 6.3e-70 268.1 228 60.1
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 3.3e-66 255.8 227 58.6
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 3.3e-66 255.8 227 58.6
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 1.2e-65 253.8 194 60.8
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.0e-64 249.2 187 63.6
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.2e-63 247.3 218 59.2
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 2.6e-63 246.1 151 78.8
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.6e-63 246.1 206 56.3
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 4.4e-63 245.4 192 61.5
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.3e-62 243.8 241 56.4
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 2.2e-62 243.0 151 78.8
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 2.2e-62 243.0 203 59.6
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 2.7e-60 236.1 161 68.3
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 4.5e-60 235.3 156 69.2
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 4.0e-56 222.2 172 63.4
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.2e-55 220.7 219 52.5
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 1.5e-55 220.3 222 48.6
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 6.4e-54 214.9 210 49.0
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 7.8e-52 208.0 180 57.2
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 3.0e-51 206.1 215 50.7
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 5.6e-50 201.8 159 59.7
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 7.3e-50 201.4 224 51.3
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 2.1e-49 199.9 213 48.8
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 7.5e-47 191.4 118 80.5
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 2.0e-39 166.8 121 62.8
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 3.4e-39 166.0 178 46.1
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 9.9e-39 164.5 121 63.6
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 7.3e-34 148.3 156 47.4
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.8e-33 146.4 123 61.8
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 9.9e-31 137.9 90 76.7
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 9.2e-29 131.3 86 76.7
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 8.1e-25 118.2 153 45.8
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 8.1e-25 118.2 153 45.8
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 4.4e-23 112.5 203 32.0
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 1.5e-18 97.4 76 64.5
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.3e-17 94.4 66 75.8
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.9e-14 83.2 71 59.2
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 2.9e-14 83.2 71 54.9
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 1.4e-13 80.9 47 72.3
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.4e-13 80.1 102 44.1
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 4.6e-12 75.9 59 66.1
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 4.5e-07 59.3 38 63.2
Psat5g188880 Pisum sativum HOM05D001742 ORTHO05D001689 7.6e-07 58.5 236 26.3
MELO3C022964.2 Cucumis melo HOM05D001742 ORTHO05D001689 2.9e-06 56.6 225 25.3
Gohir.A05G144000 Gossypium hirsutum HOM05D001742 ORTHO05D001689 3.8e-06 56.2 210 28.6
Gohir.D05G146300 Gossypium hirsutum HOM05D001742 ORTHO05D001689 3.8e-06 56.2 210 28.6
Gorai.009G150200 Gossypium raimondii HOM05D001742 ORTHO05D001689 3.8e-06 56.2 210 28.6


User provided reference genes

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