Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 4.8e-51 204.1 99 100.0
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 8.3e-43 176.8 92 91.3
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 3.6e-38 161.4 82 91.5
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.8e-37 159.1 98 76.5
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 3.0e-37 158.3 98 78.6
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 6.8e-37 157.1 79 91.1
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 8.8e-37 156.8 98 78.6
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 1.2e-36 156.4 80 90.0
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.2e-36 156.4 96 79.2
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.5e-36 156.0 97 77.3
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 2.0e-36 155.6 93 78.5
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.6e-36 155.2 79 91.1
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 3.4e-36 154.8 80 90.0
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 4.4e-36 154.5 92 79.3
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.4e-36 154.5 96 76.0
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.4e-36 154.5 96 76.0
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 4.4e-36 154.5 96 77.1
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 7.5e-36 153.7 92 79.3
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 7.5e-36 153.7 98 76.5
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 7.5e-36 153.7 93 77.4
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 7.5e-36 153.7 93 77.4
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 7.5e-36 153.7 93 77.4
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 9.8e-36 153.3 79 91.1
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 1.3e-35 152.9 86 82.6
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 1.3e-35 152.9 91 81.3
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.3e-35 152.9 88 80.7
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 2.8e-35 151.8 95 76.8
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 3.7e-35 151.4 98 73.5
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 3.7e-35 151.4 99 72.7
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 3.7e-35 151.4 96 75.0
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 4.9e-35 151.0 91 80.2
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 6.3e-35 150.6 99 73.7
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 8.3e-35 150.2 96 78.1
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.1e-34 149.8 95 75.8
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 1.1e-34 149.8 83 79.5
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 1.4e-34 149.4 95 74.7
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 1.4e-34 149.4 83 80.7
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 1.8e-34 149.1 91 76.9
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.8e-34 149.1 88 78.4
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 1.8e-34 149.1 88 78.4
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 1.8e-34 149.1 96 72.9
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 2.4e-34 148.7 101 73.3
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 2.4e-34 148.7 99 71.7
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 2.4e-34 148.7 96 74.0
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 2.4e-34 148.7 93 76.3
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 3.1e-34 148.3 95 74.7
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 4.1e-34 147.9 80 82.5
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 4.1e-34 147.9 80 82.5
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 4.1e-34 147.9 80 82.5
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 4.1e-34 147.9 80 81.2
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 4.1e-34 147.9 98 73.5
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 5.4e-34 147.5 80 82.5
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 5.4e-34 147.5 80 82.5
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 5.4e-34 147.5 89 82.0
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 7.0e-34 147.1 100 71.0
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 7.0e-34 147.1 91 76.9
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 7.0e-34 147.1 79 86.1
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 9.2e-34 146.7 85 82.4
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.2e-33 146.4 94 73.4
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.2e-33 146.4 95 72.6
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.2e-33 146.4 95 72.6
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 1.6e-33 146.0 79 84.8
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 2.0e-33 145.6 95 72.6
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 2.0e-33 145.6 79 82.3
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 2.0e-33 145.6 88 77.3
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 2.7e-33 145.2 95 71.6
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 3.5e-33 144.8 92 73.9
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 3.5e-33 144.8 91 73.6
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 3.5e-33 144.8 98 73.5
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 3.5e-33 144.8 98 73.5
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 4.5e-33 144.4 79 82.3
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 4.5e-33 144.4 88 77.3
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 4.5e-33 144.4 79 82.3
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 7.8e-33 143.7 114 65.8
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 1.0e-32 143.3 88 76.1
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 1.3e-32 142.9 79 81.0
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 1.3e-32 142.9 79 84.8
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 1.7e-32 142.5 95 71.6
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 1.7e-32 142.5 79 81.0
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 2.3e-32 142.1 93 73.1
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 2.3e-32 142.1 93 73.1
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 2.3e-32 142.1 94 72.3
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 2.9e-32 141.7 79 79.7
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.9e-32 141.7 95 71.6
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 3.8e-32 141.4 95 71.6
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 3.8e-32 141.4 91 74.7
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 6.6e-32 140.6 91 71.4
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 6.6e-32 140.6 79 78.5
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 6.6e-32 140.6 79 78.5
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 6.6e-32 140.6 96 67.7
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 8.6e-32 140.2 93 72.0
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 8.6e-32 140.2 93 72.0
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 8.6e-32 140.2 79 77.2
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.1e-31 139.8 77 80.5
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.1e-31 139.8 77 80.5
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.1e-31 139.8 95 68.4
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 2.5e-31 138.7 79 75.9
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 4.3e-31 137.9 96 67.7
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 2.1e-30 135.6 89 70.8
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.6e-30 134.8 91 69.2
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 1.0e-29 133.3 77 77.9
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 1.8e-29 132.5 75 78.7
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 3.0e-29 131.7 117 56.4
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 6.8e-29 130.6 84 71.4
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 3.4e-28 128.3 68 85.3
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 7.5e-28 127.1 65 86.2
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 2.9e-27 125.2 66 84.8
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 6.4e-27 124.0 66 81.8
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 3.2e-26 121.7 84 64.3
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 4.1e-26 121.3 66 80.3
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 5.4e-26 120.9 82 68.3
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 6.6e-24 114.0 79 65.8
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 1.5e-23 112.8 63 77.8
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 3.3e-23 111.7 72 72.2
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 1.2e-22 109.8 91 62.6
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.6e-22 109.4 85 64.7
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 3.6e-22 108.2 90 56.7
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 3.6e-22 108.2 63 76.2
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 4.7e-22 107.8 62 77.4
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 8.0e-22 107.1 52 88.5
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 1.8e-21 105.9 68 75.0
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 3.1e-21 105.1 66 71.2
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 6.8e-21 104.0 63 71.4
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 6.8e-21 104.0 66 74.2
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 2.0e-20 102.4 64 70.3
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 7.5e-20 100.5 91 53.8
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 3.9e-16 88.2 63 71.4
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 1.6e-14 82.8 74 51.4
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 2.1e-14 82.4 73 52.1
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 2.8e-14 82.0 65 60.0
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 3.6e-14 81.6 85 48.2
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 3.6e-14 81.6 62 66.1
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 2.6e-12 75.5 80 50.0
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 3.4e-12 75.1 47 72.3
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 6.4e-11 70.9 32 90.6
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 6.2e-06 54.3 65 40.0


User provided reference genes

Program Settings