Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 4.1e-81 304.7 153 100.0
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 2.0e-72 275.8 153 88.2
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 3.6e-69 265.0 150 84.7
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 4.7e-69 264.6 150 84.7
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 6.1e-69 264.2 151 81.5
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 6.1e-69 264.2 153 82.4
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.0e-68 263.5 153 82.4
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 1.4e-68 263.1 150 84.0
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 1.8e-68 262.7 153 81.0
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 2.3e-68 262.3 151 84.1
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 3.9e-68 261.5 151 82.8
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 3.9e-68 261.5 153 81.7
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 5.1e-68 261.2 153 81.7
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 5.1e-68 261.2 152 80.9
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 79.1
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 1.1e-67 260.0 151 81.5
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.0e-67 259.2 147 83.7
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 4.4e-67 258.1 151 81.5
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 5.7e-67 257.7 153 79.1
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.4e-67 257.3 153 79.7
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 9.7e-67 256.9 151 78.8
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.7e-67 256.9 153 80.4
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 9.7e-67 256.9 153 79.1
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 9.7e-67 256.9 151 80.8
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 1.3e-66 256.5 151 81.5
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 1.7e-66 256.1 153 77.8
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 2.2e-66 255.8 153 81.0
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 3.7e-66 255.0 150 78.7
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 3.7e-66 255.0 153 77.1
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 3.7e-66 255.0 153 79.1
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 3.7e-66 255.0 151 78.1
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 6.3e-66 254.2 153 77.8
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 6.3e-66 254.2 153 80.4
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 8.2e-66 253.8 152 78.3
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 8.2e-66 253.8 153 76.5
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 8.2e-66 253.8 153 76.5
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 1.1e-65 253.4 153 76.5
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.8e-65 252.7 151 78.1
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 2.4e-65 252.3 153 75.2
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 3.1e-65 251.9 150 80.0
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.1e-65 251.5 151 80.1
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 4.1e-65 251.5 153 77.8
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 5.3e-65 251.1 150 80.0
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 5.3e-65 251.1 145 82.8
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 5.3e-65 251.1 153 77.8
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 5.3e-65 251.1 147 78.2
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 5.3e-65 251.1 152 77.6
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 7.0e-65 250.8 151 76.8
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 7.0e-65 250.8 152 78.9
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 7.0e-65 250.8 149 80.5
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 9.1e-65 250.4 153 76.5
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.6e-64 249.6 145 78.6
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.0e-64 249.2 153 77.1
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.0e-64 249.2 153 75.8
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.6e-64 248.8 153 78.4
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 2.6e-64 248.8 152 79.6
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 2.6e-64 248.8 153 75.8
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 2.6e-64 248.8 151 78.1
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 3.5e-64 248.4 151 79.5
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 3.5e-64 248.4 153 79.1
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 5.9e-64 247.7 153 75.2
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 5.9e-64 247.7 152 75.0
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 5.9e-64 247.7 153 77.1
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.7e-64 247.3 150 77.3
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 7.7e-64 247.3 151 78.8
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 7.7e-64 247.3 153 79.1
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 1.0e-63 246.9 153 74.5
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 1.3e-63 246.5 153 75.2
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 2.9e-63 245.4 153 75.2
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 3.8e-63 245.0 153 72.5
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 3.8e-63 245.0 153 73.2
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 5.0e-63 244.6 151 75.5
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 6.5e-63 244.2 150 77.3
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 6.5e-63 244.2 151 72.8
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 8.5e-63 243.8 151 76.2
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 8.5e-63 243.8 150 76.0
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 8.5e-63 243.8 153 71.9
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 1.1e-62 243.4 155 73.5
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.5e-62 243.0 153 73.9
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 3.2e-62 241.9 153 74.5
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 3.2e-62 241.9 153 72.5
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 3.2e-62 241.9 153 75.8
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.5e-62 241.1 155 73.5
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 5.5e-62 241.1 151 75.5
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 7.2e-62 240.7 150 77.3
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.4e-62 240.4 153 73.9
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.2e-61 240.0 152 74.3
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 4.7e-61 238.0 153 72.5
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 6.1e-61 237.7 151 72.2
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 6.1e-61 237.7 151 76.2
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 8.0e-61 237.3 149 77.9
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.0e-60 236.9 153 73.9
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.0e-60 236.9 153 74.5
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.3e-60 235.7 151 75.5
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 2.3e-60 235.7 153 73.9
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 6.7e-60 234.2 150 74.0
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 8.8e-60 233.8 150 70.0
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 1.1e-59 233.4 151 75.5
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.1e-59 233.4 149 72.5
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.1e-59 233.4 151 70.9
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 2.0e-59 232.6 150 70.0
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 2.6e-59 232.3 151 74.2
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 9.7e-59 230.3 150 70.0
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.7e-58 229.6 150 70.7
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.7e-58 229.6 151 69.5
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 2.2e-58 229.2 150 70.0
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 2.2e-58 229.2 150 68.7
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 2.8e-58 228.8 153 70.6
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 3.7e-58 228.4 151 70.9
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 4.8e-58 228.0 150 69.3
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 4.8e-58 228.0 147 76.9
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 6.3e-58 227.6 150 69.3
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 6.3e-58 227.6 150 70.0
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 6.3e-58 227.6 150 69.3
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.4e-57 226.5 151 67.5
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.8e-57 226.1 150 69.3
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 4.1e-57 224.9 150 67.3
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 1.2e-56 223.4 150 68.0
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 1.1e-54 216.9 168 61.3
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.9e-54 216.1 150 70.7
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 2.5e-54 215.7 145 69.0
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 7.2e-54 214.2 145 67.6
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 1.2e-53 213.4 122 86.9
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 2.7e-53 212.2 119 84.9
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.0e-52 208.4 142 70.4
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 5.7e-51 204.5 152 60.5
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 1.3e-50 203.4 150 63.3
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 1.7e-50 203.0 149 61.1
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.4e-49 198.0 153 64.7
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.7e-47 193.0 124 74.2
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.0e-44 183.7 111 75.7
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 1.8e-44 183.0 125 68.0
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 6.8e-44 181.0 111 74.8
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 4.4e-43 178.3 181 55.8
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 2.8e-42 175.6 149 52.3
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 8.9e-36 154.1 95 78.9
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 7.5e-35 151.0 149 48.3
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.6e-30 134.8 100 67.0
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 2.8e-29 132.5 75 80.0
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 1.4e-28 130.2 144 45.8
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.4e-28 130.2 75 80.0
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 6.8e-28 127.9 78 75.6
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 6.8e-28 127.9 121 55.4
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 1.3e-26 123.6 75 76.0
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 3.2e-25 119.0 102 63.7
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 3.2e-25 119.0 75 74.7
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 7.0e-25 117.9 75 74.7
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.6e-24 116.7 65 81.5
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.6e-24 116.7 75 77.3
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.5e-24 115.5 65 80.0
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 8.1e-21 104.4 149 37.6
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 2.3e-12 76.3 48 79.2
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.0e-07 60.8 67 52.2


User provided reference genes

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