Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 6.4e-154 547.4 274 100.0
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 8.0e-88 327.8 355 58.0
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 2.7e-75 286.2 357 50.4
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 4.9e-69 265.4 363 49.0
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 8.4e-61 238.0 359 42.1
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 7.1e-60 235.0 347 42.1
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.1e-59 233.4 353 42.8
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 4.6e-59 232.3 370 41.6
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 4.6e-59 232.3 352 42.6
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 6.0e-59 231.9 348 42.0
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 6.0e-59 231.9 348 41.7
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.3e-58 230.7 352 42.6
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 1.5e-57 227.3 357 40.1
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 3.3e-57 226.1 359 40.7
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 3.3e-57 226.1 352 41.8
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 3.3e-57 226.1 352 41.8
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 4.3e-57 225.7 336 43.2
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 4.3e-57 225.7 356 40.7
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 5.6e-57 225.3 345 42.0
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 7.3e-57 224.9 351 40.5
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 9.6e-57 224.6 360 41.4
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 9.6e-57 224.6 359 40.7
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 1.6e-56 223.8 361 40.7
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 2.1e-56 223.4 345 41.7
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 2.1e-56 223.4 357 39.5
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 3.6e-56 222.6 355 41.1
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 6.2e-56 221.9 359 40.4
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 1.8e-55 220.3 346 41.3
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 2.4e-55 219.9 356 39.3
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 3.1e-55 219.5 356 40.7
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 5.2e-55 218.8 347 40.6
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 6.9e-55 218.4 347 40.3
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 9.0e-55 218.0 317 42.0
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 9.0e-55 218.0 356 40.4
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 9.0e-55 218.0 343 40.2
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 1.2e-54 217.6 344 40.7
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 2.6e-54 216.5 349 40.4
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 3.4e-54 216.1 366 38.8
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 5.8e-54 215.3 346 39.6
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 5.8e-54 215.3 354 40.7
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 1.7e-53 213.8 355 40.3
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 1.7e-53 213.8 358 40.2
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 1.7e-53 213.8 340 40.0
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 2.9e-53 213.0 359 40.1
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 3.8e-53 212.6 348 40.5
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 6.4e-53 211.8 355 40.3
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 8.4e-53 211.5 359 39.0
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 1.1e-52 211.1 359 39.6
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 1.9e-52 210.3 356 39.0
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 3.2e-52 209.5 354 39.8
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 1.2e-51 207.6 341 41.1
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 1.6e-51 207.2 359 38.7
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 2.1e-51 206.8 336 40.2
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 2.1e-51 206.8 336 40.2
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 2.7e-51 206.5 359 38.4
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 3.5e-51 206.1 329 41.9
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 6.0e-51 205.3 336 39.9
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 6.0e-51 205.3 354 39.8
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 6.0e-51 205.3 355 41.1
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 7.8e-51 204.9 347 40.1
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 1.7e-50 203.8 327 40.4
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 2.3e-50 203.4 354 38.7
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 2.3e-50 203.4 334 38.9
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 3.0e-50 203.0 352 38.6
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 6.6e-50 201.8 352 39.2
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 1.5e-49 200.7 342 38.9
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 1.9e-49 200.3 341 38.7
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 1.9e-49 200.3 353 38.0
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 4.3e-49 199.1 370 36.2
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 9.6e-49 198.0 298 41.9
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 1.3e-48 197.6 352 37.8
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 1.3e-48 197.6 362 37.0
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 1.3e-48 197.6 339 38.9
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 2.1e-48 196.8 326 39.0
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 4.8e-48 195.7 339 39.5
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 6.2e-48 195.3 338 39.9
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 1.4e-47 194.1 355 37.5
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 1.4e-47 194.1 341 37.8
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 1.4e-47 194.1 361 36.8
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 4.0e-47 192.6 339 39.5
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 4.0e-47 192.6 339 39.5
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 9.0e-47 191.4 335 38.8
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 1.5e-46 190.7 341 37.5
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 3.4e-46 189.5 366 35.5
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 4.5e-46 189.1 327 37.9
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 5.8e-46 188.7 328 38.4
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 4.9e-45 185.7 359 36.5
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 6.4e-45 185.3 359 36.5
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 2.4e-44 183.3 362 35.9
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 2.4e-44 183.3 362 35.9
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 1.6e-43 180.6 360 36.4
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 3.0e-42 176.4 309 39.8
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 7.4e-41 171.8 251 42.2
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 4.8e-40 169.1 199 48.7
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 6.2e-40 168.7 322 38.2
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 5.8e-38 162.2 335 36.1
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 8.4e-37 158.3 380 32.6
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 1.1e-36 157.9 202 45.0
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 2.4e-36 156.8 353 30.9
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 2.4e-36 156.8 353 30.9
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 3.2e-36 156.4 277 40.1
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 7.9e-35 151.8 308 37.0
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 1.4e-31 141.0 344 31.7
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 2.2e-29 133.7 287 35.2
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 2.5e-28 130.2 315 33.7
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 7.1e-28 128.6 327 30.9
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.3e-26 124.4 184 44.0
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 4.1e-23 112.8 124 50.8
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 5.5e-20 102.4 195 36.4
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 1.2e-19 101.3 66 72.7
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 2.7e-19 100.1 358 26.5
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 2.3e-18 97.1 134 43.3
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 3.3e-17 93.2 335 25.4
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.7e-16 90.9 73 61.6
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 4.1e-15 86.3 115 41.7
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 8.5e-13 78.6 198 31.3
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 3.6e-11 73.2 53 69.8
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 3.0e-10 70.1 320 24.7
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 3.9e-10 69.7 53 62.3
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 8.8e-10 68.6 52 63.5
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 1.7e-08 64.3 135 36.3
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 2.8e-08 63.5 207 26.6
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 4.8e-08 62.8 53 62.3
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 6.3e-08 62.4 144 37.5
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 2.4e-07 60.5 63 47.6


User provided reference genes

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