Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 1.6e-194 682.6 338 100.0
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 5.7e-144 514.6 316 82.6
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 5.0e-140 501.5 268 90.7
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 3.1e-134 482.3 317 75.7
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.0e-132 477.2 266 84.6
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 6.5e-132 474.6 310 74.8
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 6.5e-132 474.6 307 75.9
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.5e-131 473.4 311 75.2
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.5e-131 472.6 307 75.9
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 3.2e-131 472.2 312 75.0
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 7.2e-131 471.1 307 74.9
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 9.5e-131 470.7 308 76.0
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 1.2e-130 470.3 294 77.6
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.2e-130 470.3 292 77.7
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.2e-130 470.3 294 77.6
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 4.7e-130 468.4 270 83.0
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 2.3e-129 466.1 270 80.4
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 3.0e-129 465.7 264 82.2
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 6.8e-129 464.5 307 73.3
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 1.2e-128 463.8 307 73.3
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 1.5e-128 463.4 284 78.2
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 2.0e-128 463.0 314 73.9
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 2.6e-128 462.6 299 74.6
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 4.4e-128 461.8 314 73.9
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 4.4e-128 461.8 307 73.9
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 4.4e-128 461.8 262 82.1
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 9.8e-128 460.7 308 74.0
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 9.8e-128 460.7 267 80.9
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 9.8e-128 460.7 306 72.9
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 1.3e-127 460.3 270 80.0
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 1.3e-127 460.3 265 81.5
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 1.7e-127 459.9 278 79.1
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 4.9e-127 458.4 308 74.4
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 4.9e-127 458.4 308 74.0
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 6.3e-127 458.0 266 80.8
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 1.1e-126 457.2 313 72.2
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 1.1e-126 457.2 307 73.3
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 1.4e-126 456.8 308 73.7
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 1.4e-126 456.8 271 79.7
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 1.8e-126 456.4 266 80.5
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 1.8e-126 456.4 266 80.5
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 1.8e-126 456.4 270 79.6
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.8e-126 456.4 274 80.7
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 2.4e-126 456.1 261 80.8
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 3.1e-126 455.7 282 78.0
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 4.1e-126 455.3 266 80.8
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.1e-126 455.3 311 73.6
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 4.1e-126 455.3 291 77.3
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 5.4e-126 454.9 265 81.1
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 7.0e-126 454.5 308 73.1
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 7.0e-126 454.5 270 79.3
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 9.2e-126 454.1 305 73.4
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 9.2e-126 454.1 315 71.7
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 9.2e-126 454.1 293 76.1
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 9.2e-126 454.1 254 83.1
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.2e-125 453.8 263 80.2
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 1.2e-125 453.8 265 81.9
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 4.5e-125 451.8 266 79.7
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 5.9e-125 451.4 280 75.7
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 7.7e-125 451.1 305 73.4
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 1.3e-124 450.3 308 73.1
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 1.3e-124 450.3 286 76.6
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 1.3e-124 450.3 310 72.6
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 1.7e-124 449.9 298 72.5
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 3.8e-124 448.7 262 80.5
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 5.0e-124 448.4 266 79.3
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 5.0e-124 448.4 266 79.3
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 8.6e-124 447.6 254 81.9
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 4.3e-123 445.3 250 83.2
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 5.6e-123 444.9 289 73.0
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 1.2e-122 443.7 253 82.2
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 2.1e-122 443.0 276 76.8
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 2.1e-122 443.0 271 77.9
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 8.0e-122 441.0 281 76.2
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 1.0e-121 440.7 265 79.2
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.2e-120 437.2 264 78.0
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 1.2e-120 437.2 242 85.5
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 1.5e-120 436.8 284 74.3
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 1.5e-120 436.8 274 74.8
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 2.0e-120 436.4 282 73.4
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 4.4e-120 435.3 280 73.2
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 1.3e-119 433.7 293 71.7
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 2.2e-119 433.0 307 68.7
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 6.4e-119 431.4 242 83.5
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 6.4e-119 431.4 242 83.5
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 1.4e-118 430.3 284 73.9
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 3.2e-118 429.1 265 76.6
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 5.4e-118 428.3 297 70.7
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 3.5e-117 425.6 281 73.7
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 7.8e-117 424.5 314 68.5
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 1.0e-116 424.1 283 72.1
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 1.3e-116 423.7 283 72.1
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 5.0e-116 421.8 242 81.8
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 8.6e-116 421.0 262 76.0
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 2.9e-111 406.0 251 76.9
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 2.7e-109 399.4 324 63.3
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 8.6e-108 394.4 293 66.2
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 9.8e-104 380.9 278 64.7
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 9.2e-102 374.4 312 58.0
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 1.6e-101 373.6 259 67.6
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 6.0e-101 371.7 270 65.2
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 1.0e-100 370.9 219 80.8
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.1e-99 367.5 270 69.6
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.6e-98 363.6 264 66.3
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 2.1e-98 363.2 265 70.9
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 1.2e-96 357.5 199 85.4
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 1.6e-90 337.0 191 84.3
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 2.0e-88 330.1 189 82.5
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 2.4e-86 323.2 262 60.7
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 2.1e-85 320.1 191 79.1
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.7e-85 319.7 236 68.2
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 1.0e-84 317.8 191 78.5
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 1.1e-83 314.3 189 77.8
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.9e-83 313.5 243 60.9
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.1e-82 310.1 173 82.7
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 6.2e-82 308.5 267 58.4
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 5.3e-81 305.4 184 77.7
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 1.9e-75 287.0 210 70.0
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.5e-67 260.0 256 52.3
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 1.7e-63 247.3 166 71.7
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 7.1e-62 241.9 189 64.0
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 6.3e-58 228.8 259 51.0
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.1e-35 154.8 124 61.3
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 3.3e-35 153.3 274 36.9
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 1.2e-32 144.8 85 80.0
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.5e-22 111.3 317 28.1
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 5.5e-22 109.4 68 67.6
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 3.0e-20 103.6 65 73.8
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 2.6e-19 100.5 289 32.2
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.9e-14 84.3 77 61.0
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 3.6e-13 80.1 104 50.0
CARHR016590 Cardamine hirsuta HOM05D006171 ORTHO05D007294 1.9e-06 57.8 62 51.6


User provided reference genes

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