Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 1.7e-120 436.0 217 100.0
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 2.0e-97 359.4 224 83.9
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.1e-92 343.6 218 83.5
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 2.6e-73 279.3 215 69.3
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 3.9e-69 265.4 236 61.0
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.5e-68 262.7 200 64.5
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 9.5e-68 260.8 205 63.9
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.8e-66 256.5 226 59.7
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 3.1e-66 255.8 192 69.8
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 6.8e-66 254.6 212 59.9
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 3.4e-65 252.3 227 58.1
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 4.4e-65 251.9 229 58.5
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.4e-63 246.9 231 58.0
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.2e-63 245.7 216 58.8
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 4.1e-63 245.4 207 60.9
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 4.1e-63 245.4 223 55.2
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 5.4e-63 245.0 206 59.2
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 5.4e-63 245.0 222 54.5
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 7.1e-63 244.6 234 56.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.2e-62 243.8 217 57.1
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 4.6e-62 241.9 213 57.7
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 6.0e-62 241.5 224 54.0
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 6.0e-62 241.5 216 57.4
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 1.0e-61 240.7 228 54.8
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 2.3e-61 239.6 225 54.2
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 3.0e-61 239.2 229 57.6
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 3.9e-61 238.8 192 59.4
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 5.1e-61 238.4 213 58.2
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 6.6e-61 238.0 214 56.1
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 8.6e-61 237.7 225 56.0
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 2.5e-60 236.1 227 50.2
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 4.3e-60 235.3 227 49.8
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 9.6e-60 234.2 212 58.5
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 1.2e-59 233.8 200 56.0
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 2.1e-59 233.0 212 58.0
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 2.1e-59 233.0 226 54.4
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.8e-59 232.6 208 55.8
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 4.7e-59 231.9 223 55.6
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 4.7e-59 231.9 228 55.7
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 6.2e-59 231.5 200 58.0
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 8.1e-59 231.1 208 55.8
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 1.1e-58 230.7 208 54.8
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.8e-58 229.9 213 54.0
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.4e-58 229.6 205 56.1
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.1e-58 229.2 239 54.0
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 4.0e-58 228.8 223 56.1
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 4.0e-58 228.8 207 57.5
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 8.9e-58 227.6 218 53.7
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 8.9e-58 227.6 236 53.8
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.0e-57 226.5 216 53.7
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 2.6e-57 226.1 203 55.2
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 3.4e-57 225.7 218 50.9
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 4.4e-57 225.3 201 57.2
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.3e-56 223.8 230 53.9
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 2.2e-56 223.0 206 53.9
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 3.8e-56 222.2 213 53.1
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 8.4e-56 221.1 256 49.6
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 1.1e-55 220.7 199 56.3
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.4e-55 220.3 206 53.4
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 1.9e-55 219.9 201 52.7
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.9e-55 219.9 201 52.7
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 4.2e-55 218.8 213 53.1
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.4e-55 218.4 249 51.8
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 5.4e-55 218.4 201 52.7
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 5.4e-55 218.4 191 57.6
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 3.5e-54 215.7 207 53.1
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 4.6e-54 215.3 207 51.2
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.3e-53 213.8 223 46.2
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 3.9e-53 212.2 203 53.7
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.5e-52 210.3 208 49.0
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 2.5e-52 209.5 204 52.5
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.3e-52 209.1 206 53.4
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 5.6e-52 208.4 213 53.5
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 9.6e-52 207.6 200 56.5
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 9.6e-52 207.6 201 51.2
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.3e-51 207.2 209 49.8
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 3.6e-51 205.7 169 60.4
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.8e-51 205.3 198 50.5
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 1.1e-50 204.1 233 47.6
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 1.4e-50 203.8 213 53.1
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.4e-50 203.8 213 53.1
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 2.4e-50 203.0 226 48.7
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 4.0e-50 202.2 193 50.3
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 5.3e-50 201.8 236 45.8
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 6.9e-50 201.4 206 51.5
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 6.9e-50 201.4 194 55.2
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 9.0e-50 201.1 197 52.3
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 2.0e-49 199.9 214 52.3
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 2.6e-49 199.5 194 52.1
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 2.6e-49 199.5 194 52.1
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 3.4e-49 199.1 217 49.8
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 5.8e-49 198.4 216 51.4
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 1.3e-48 197.2 224 44.2
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.7e-48 196.8 219 44.7
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 1.7e-48 196.8 205 49.8
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 2.2e-48 196.4 216 50.5
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 2.9e-48 196.1 188 52.7
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 2.9e-48 196.1 190 50.0
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 3.8e-48 195.7 214 49.5
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 4.9e-48 195.3 216 50.5
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 4.9e-48 195.3 219 49.3
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 4.9e-48 195.3 219 49.3
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 8.4e-48 194.5 205 49.8
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-47 194.1 219 49.8
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 3.2e-47 192.6 187 50.3
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 4.2e-47 192.2 213 47.4
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 9.3e-47 191.0 209 46.4
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.6e-46 190.3 239 44.4
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 3.5e-46 189.1 168 56.0
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.6e-46 188.7 203 49.8
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.0e-45 187.6 249 47.8
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 3.0e-45 186.0 241 45.2
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.1e-44 184.1 179 53.1
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 3.3e-44 182.6 207 48.3
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 8.1e-43 177.9 183 48.6
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.4e-42 177.2 166 59.6
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 4.0e-42 175.6 185 42.7
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 4.5e-41 172.2 181 51.9
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.9e-40 168.7 227 43.2
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 3.2e-39 166.0 238 42.4
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.6e-38 162.2 261 43.7
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 6.0e-38 161.8 203 46.3
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 7.9e-38 161.4 200 45.5
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 2.0e-33 146.7 127 55.9
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 9.3e-31 137.9 193 41.5
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.0e-29 134.4 189 37.0
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.3e-29 134.0 130 48.5
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 6.7e-29 131.7 109 59.6
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 2.5e-28 129.8 192 45.3
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.5e-28 129.8 137 56.2
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.5e-25 120.6 118 50.0
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.9e-20 103.6 105 47.6
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 9.7e-20 101.3 158 41.1
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 2.5e-15 86.7 118 46.6
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 7.2e-15 85.1 81 42.0
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 9.4e-15 84.7 92 51.1
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.6e-14 82.8 75 52.0
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 7.9e-14 81.6 92 48.9
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 3.0e-13 79.7 39 79.5
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.5e-12 77.4 61 52.5
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 4.8e-11 72.4 79 49.4
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.4e-10 70.1 75 49.3
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 1.7e-08 63.9 34 70.6
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 5.0e-08 62.4 72 44.4
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 6.5e-08 62.0 38 73.7
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 2.5e-07 60.1 48 50.0
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 5.5e-07 58.9 77 42.9
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 7.2e-07 58.5 126 33.3


User provided reference genes

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