Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 4.2e-190 667.9 351 100.0
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 2.8e-178 628.6 356 93.5
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.6e-149 533.1 334 83.5
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 7.7e-144 514.2 312 90.1
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 3.2e-137 492.3 353 75.6
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 5.0e-127 458.4 345 70.7
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 4.3e-126 455.3 356 69.1
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 8.0e-125 451.1 348 68.1
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 3.1e-124 449.1 351 68.7
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 1.3e-119 433.7 354 65.3
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 1.9e-118 429.9 354 64.4
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 6.2e-117 424.9 368 64.7
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 6.2e-117 424.9 354 64.1
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 1.1e-116 424.1 349 64.5
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 4.0e-116 422.2 351 64.4
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 1.5e-115 420.2 350 64.0
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 9.9e-115 417.5 333 64.9
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 9.9e-115 417.5 374 61.2
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 8.3e-114 414.5 334 64.7
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 2.4e-113 412.9 385 59.5
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 1.6e-112 410.2 357 61.1
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 1.0e-111 407.5 345 62.6
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 1.0e-111 407.5 344 63.4
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 2.3e-111 406.4 334 63.5
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 5.1e-111 405.2 344 62.2
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 5.1e-111 405.2 353 62.9
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 8.6e-111 404.4 334 64.4
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 1.1e-110 404.1 334 63.2
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 1.9e-110 403.3 428 53.7
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 5.6e-110 401.7 338 64.2
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 3.6e-109 399.1 344 62.2
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.4e-108 396.4 344 62.2
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 9.9e-107 391.0 334 62.0
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 1.3e-106 390.6 334 61.4
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.7e-106 390.2 344 60.8
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 4.9e-106 388.7 351 59.5
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 8.4e-106 387.9 347 60.8
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 1.1e-105 387.5 362 58.3
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 1.1e-105 387.5 347 60.5
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 1.4e-105 387.1 334 61.4
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.9e-105 386.7 354 59.0
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 2.4e-105 386.3 353 59.2
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.1e-105 384.8 344 61.3
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.2e-104 384.0 334 61.7
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 1.6e-104 383.6 279 72.4
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 2.7e-104 382.9 334 59.6
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 6.0e-104 381.7 332 61.7
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 1.7e-103 380.2 336 59.8
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 5.1e-103 378.6 337 59.9
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 6.6e-103 378.3 347 59.1
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 6.6e-103 378.3 316 64.2
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.5e-102 377.1 336 58.0
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 2.5e-102 376.3 334 60.8
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.6e-102 375.2 376 56.1
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 5.6e-102 375.2 334 59.9
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 1.3e-101 374.0 334 58.7
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 3.6e-101 372.5 336 58.3
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 3.6e-101 372.5 316 63.9
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 4.8e-101 372.1 363 55.9
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 1.1e-100 370.9 317 62.8
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 3.1e-100 369.4 464 48.1
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 5.3e-100 368.6 349 55.0
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 1.2e-99 367.5 334 57.2
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 1.5e-99 367.1 339 59.3
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 9.9e-99 364.4 340 56.2
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.3e-98 364.0 340 56.2
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 1.7e-98 363.6 334 56.6
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 2.9e-98 362.8 334 57.2
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 3.8e-98 362.5 334 57.8
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 6.4e-98 361.7 344 58.7
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 1.4e-97 360.5 349 55.6
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 5.4e-97 358.6 340 55.9
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 5.4e-97 358.6 294 63.9
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 5.4e-97 358.6 334 57.5
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 5.4e-97 358.6 336 57.7
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 7.1e-97 358.2 340 56.8
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 1.2e-96 357.5 340 55.6
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 1.6e-96 357.1 334 56.9
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 1.6e-96 357.1 340 56.8
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 3.5e-96 355.9 351 56.1
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 4.6e-96 355.5 347 56.2
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 1.3e-95 354.0 317 62.1
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 1.7e-95 353.6 310 60.0
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 1.7e-95 353.6 347 55.9
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.9e-95 352.4 344 57.3
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 6.6e-95 351.7 334 56.6
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.1e-94 350.9 355 54.1
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 3.3e-94 349.4 362 52.2
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 4.3e-94 349.0 369 52.0
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 5.6e-94 348.6 297 62.0
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 1.1e-92 344.4 335 53.7
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 1.8e-92 343.6 362 51.9
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 3.1e-92 342.8 335 53.4
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.0e-92 342.4 460 45.7
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 1.1e-89 334.3 362 53.3
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 2.4e-89 333.2 307 58.6
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 3.2e-89 332.8 344 55.2
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 3.5e-88 329.3 334 56.6
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.8e-87 327.0 305 57.7
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 1.9e-86 323.6 294 58.5
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 2.5e-86 323.2 294 58.8
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 2.5e-86 323.2 314 56.7
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 3.3e-86 322.8 340 52.4
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 4.3e-86 322.4 257 67.7
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.6e-86 322.0 305 57.7
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.1e-84 317.8 298 57.4
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.4e-84 317.4 339 53.1
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 1.8e-84 317.0 271 61.6
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 4.0e-84 315.8 404 48.8
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 1.2e-83 314.3 344 53.8
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 7.6e-83 311.6 299 57.9
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 4.9e-82 308.9 345 49.6
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 4.2e-81 305.8 300 54.3
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 3.0e-79 299.7 306 56.2
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.1e-76 291.2 225 67.6
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 1.4e-76 290.8 545 38.0
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 1.2e-75 287.7 320 55.0
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.1e-70 271.2 342 47.1
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.8e-69 266.5 341 46.0
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 3.1e-68 263.1 356 46.3
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 6.1e-64 248.8 247 57.1
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 2.0e-62 243.8 334 45.8
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 3.4e-59 233.0 251 51.4
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 4.7e-56 222.6 152 72.4
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 1.1e-54 218.0 164 68.9
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 2.0e-51 207.2 170 67.1
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 4.5e-51 206.1 203 55.2
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 1.3e-50 204.5 247 48.2
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 8.5e-50 201.8 363 36.9
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 2.1e-48 197.2 127 75.6
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 4.4e-46 189.5 161 65.2
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 1.3e-45 188.0 332 36.1
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 2.8e-45 186.8 197 54.3
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 7.0e-44 182.2 320 36.6
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.4e-41 171.8 207 49.3
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 3.6e-40 169.9 113 73.5
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 3.6e-40 169.9 113 73.5
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 8.0e-40 168.7 294 36.7
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.8e-36 157.5 110 70.9
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 5.2e-31 139.4 104 65.4
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 2.6e-30 137.1 236 39.4
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-25 121.3 162 42.0
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 8.0e-24 115.5 107 56.1
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 5.7e-22 109.4 250 35.6
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 3.2e-20 103.6 145 40.7
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.6e-19 101.3 130 45.4
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 1.7e-18 97.8 332 30.4
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 1.2e-16 91.7 112 46.4
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 1.2e-14 85.1 86 51.2
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 3.2e-12 77.0 128 39.1
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 2.5e-09 67.4 248 26.2
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 2.6e-06 57.4 58 56.9
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 3.4e-06 57.0 61 44.3
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 7.5e-06 55.8 61 44.3


User provided reference genes

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