Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 1.5e-245 852.4 441 100.0
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 2.0e-229 798.9 441 93.4
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 2.1e-207 725.7 429 88.1
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 1.7e-204 716.1 445 82.9
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 1.7e-204 716.1 438 84.0
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 8.7e-201 703.7 442 81.9
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 5.6e-200 701.0 444 80.6
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 4.7e-199 698.0 441 81.4
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.4e-198 696.4 440 80.9
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 5.3e-198 694.5 444 80.9
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 3.4e-197 691.8 442 80.8
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 5.8e-197 691.0 444 81.8
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 5.8e-197 691.0 443 79.2
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 7.6e-197 690.6 442 80.5
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 4.9e-196 688.0 442 79.4
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 1.9e-195 686.0 435 80.2
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 4.2e-195 684.9 444 79.5
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 9.3e-195 683.7 434 81.6
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 1.6e-194 682.9 436 80.3
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 2.1e-194 682.6 427 82.9
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 4.6e-194 681.4 432 80.6
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 6.0e-194 681.0 431 80.7
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 2.3e-193 679.1 433 80.1
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 3.0e-193 678.7 435 79.3
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 3.0e-193 678.7 440 79.1
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 8.7e-193 677.2 432 80.6
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 1.1e-192 676.8 442 79.4
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.9e-192 676.0 434 80.4
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 1.9e-192 676.0 439 80.6
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 1.9e-192 676.0 442 79.6
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 3.3e-192 675.2 440 78.0
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 5.6e-192 674.5 441 78.5
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 7.3e-192 674.1 441 78.5
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 9.6e-192 673.7 432 79.4
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 1.3e-191 673.3 431 80.7
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 1.6e-191 672.9 430 80.2
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 6.2e-191 671.0 429 80.2
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 2.4e-190 669.1 429 79.7
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 2.4e-190 669.1 429 79.7
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 4.0e-190 668.3 437 78.7
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 5.3e-190 667.9 443 77.9
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 9.0e-190 667.2 438 77.9
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 9.0e-190 667.2 429 80.2
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 9.0e-190 667.2 434 78.8
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.2e-189 666.8 430 79.5
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 1.5e-189 666.4 438 77.9
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 1.5e-189 666.4 430 79.1
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 2.6e-189 665.6 429 78.6
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 1.7e-188 662.9 438 78.1
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 2.9e-188 662.1 458 74.7
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.9e-188 662.1 428 81.1
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 4.9e-188 661.4 454 76.7
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 6.4e-188 661.0 428 80.8
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 6.4e-188 661.0 429 78.8
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 8.4e-188 660.6 429 78.6
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 1.1e-187 660.2 440 76.4
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 1.4e-187 659.8 438 77.9
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 1.9e-187 659.4 430 79.3
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 1.9e-187 659.4 430 79.3
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 2.4e-187 659.1 436 78.2
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 2.4e-187 659.1 433 77.8
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.4e-187 659.1 433 77.8
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 4.2e-187 658.3 438 77.2
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 4.2e-187 658.3 432 78.2
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 4.2e-187 658.3 432 78.2
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.2e-187 658.3 430 77.7
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.1e-187 657.5 428 78.0
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 7.1e-187 657.5 428 78.0
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 9.3e-187 657.1 429 78.1
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 9.3e-187 657.1 428 79.0
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.3e-187 657.1 438 79.0
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 9.3e-187 657.1 428 78.7
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 1.2e-186 656.8 434 77.9
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 1.2e-186 656.8 429 77.9
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 1.2e-186 656.8 429 78.1
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.2e-186 656.8 428 80.4
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 1.6e-186 656.4 429 78.1
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.6e-186 656.4 431 78.0
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 2.1e-186 656.0 429 77.9
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 2.7e-186 655.6 437 77.8
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 2.7e-186 655.6 429 77.9
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 2.7e-186 655.6 429 77.9
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 2.7e-186 655.6 429 77.9
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.7e-186 655.6 430 77.4
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.7e-186 655.6 460 75.4
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.5e-186 655.2 445 75.7
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 3.5e-186 655.2 428 78.5
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 4.6e-186 654.8 433 77.6
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 6.0e-186 654.4 429 77.9
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 1.0e-185 653.7 438 77.4
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.3e-185 653.3 434 77.6
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 2.3e-185 652.5 444 76.1
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 2.3e-185 652.5 429 77.9
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 6.7e-185 651.0 432 77.3
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 8.7e-185 650.6 433 77.1
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 1.9e-184 649.4 429 78.6
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 2.5e-184 649.0 430 77.7
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.5e-184 649.0 390 81.8
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 2.8e-183 645.6 443 75.4
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 8.1e-183 644.0 427 76.8
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 1.1e-182 643.7 435 76.3
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 1.1e-182 643.7 426 77.7
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 1.8e-182 642.9 435 75.9
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 5.3e-182 641.3 481 71.5
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 5.3e-182 641.3 438 77.4
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 9.0e-182 640.6 441 74.6
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 1.2e-181 640.2 435 75.9
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 2.0e-181 639.4 432 75.9
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 9.9e-181 637.1 438 75.6
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 1.3e-180 636.7 559 63.0
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 2.9e-180 635.6 521 66.8
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.8e-180 635.2 467 74.1
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.4e-179 633.3 431 74.7
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 4.2e-179 631.7 429 76.2
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 5.5e-179 631.3 436 75.5
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 9.3e-179 630.6 433 73.9
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 7.9e-178 627.5 443 73.1
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 1.3e-177 626.7 437 74.1
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 5.1e-177 624.8 397 77.8
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.5e-176 622.5 428 77.6
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 1.3e-175 620.2 389 78.4
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 1.5e-173 613.2 435 73.3
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 3.8e-172 608.6 431 74.2
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 4.2e-171 605.1 390 79.7
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 7.9e-170 600.9 429 72.5
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 2.3e-169 599.4 394 75.9
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 3.9e-169 598.6 381 78.5
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 1.9e-168 596.3 383 75.7
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 5.7e-168 594.7 384 75.5
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 2.8e-167 592.4 428 70.6
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 6.3e-167 591.3 342 84.8
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-166 590.5 425 71.8
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.2e-165 587.0 431 72.4
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 2.8e-159 565.8 354 81.1
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 1.8e-158 563.1 364 79.1
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 3.4e-157 558.9 341 82.7
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.4e-155 553.5 350 80.0
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 5.5e-155 551.6 349 81.1
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 2.1e-154 549.7 366 79.2
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 7.0e-150 534.6 427 68.1
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.1e-147 527.3 343 75.5
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 1.1e-144 517.3 380 70.3
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 3.3e-144 515.8 354 74.9
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 4.4e-144 515.4 387 68.0
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 5.9e-141 505.0 365 70.7
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 3.8e-140 502.3 353 73.1
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 1.2e-138 497.3 437 62.7
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 3.8e-124 449.1 263 83.3
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 2.5e-123 446.4 335 68.4
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 9.5e-115 417.9 269 78.8
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 8.0e-114 414.8 270 75.9
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 1.3e-111 407.5 404 56.2
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 3.2e-102 376.3 234 81.2
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 2.9e-87 326.6 185 87.0
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 3.0e-84 316.6 233 73.0
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.5e-83 314.3 244 66.8
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.3e-83 312.8 183 84.2
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 4.0e-81 306.2 365 45.8
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 9.3e-78 295.0 355 48.5
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 3.9e-68 263.1 155 78.7
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 1.0e-63 248.4 146 83.6
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 4.6e-61 239.6 197 62.9
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 4.6e-61 239.6 197 62.9
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 9.6e-59 231.9 220 62.3
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.8e-57 227.6 244 57.8
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 4.7e-37 159.8 145 58.6
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 1.0e-36 158.7 100 80.0
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.0e-31 142.1 220 46.4
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.1e-25 120.2 296 36.1
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 1.0e-23 115.5 82 72.0
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 1.5e-22 111.7 61 91.8
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 2.8e-18 97.4 82 63.4
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 4.8e-18 96.7 64 76.6
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 4.8e-18 96.7 64 76.6
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 7.0e-17 92.8 104 54.8
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 2.2e-15 87.8 83 57.8
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.5e-15 86.3 90 52.2
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 6.5e-15 86.3 64 73.4
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 1.0e-12 79.0 45 80.0
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 9.8e-11 72.4 74 55.4
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 1.7e-10 71.6 74 55.4
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 3.7e-10 70.5 51 68.6
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 4.9e-10 70.1 74 54.1
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 5.4e-09 66.6 43 79.1
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 2.9e-07 60.8 43 62.8
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 1.5e-06 58.5 28 82.1


User provided reference genes

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