Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 5.6e-113 411.0 212 100.0
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 4.2e-92 341.7 215 82.8
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 1.0e-90 337.0 217 82.9
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 3.1e-71 272.3 216 65.3
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 1.9e-68 263.1 217 68.7
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 2.2e-61 239.6 218 61.5
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 1.2e-59 233.8 219 59.8
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 2.1e-59 233.0 220 60.5
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 2.7e-59 232.6 220 60.5
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 7.9e-59 231.1 191 61.8
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 7.9e-59 231.1 218 60.1
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 8.7e-58 227.6 222 59.9
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 2.5e-57 226.1 221 60.2
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 4.3e-57 225.3 190 62.1
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 5.7e-57 224.9 220 59.1
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.6e-56 223.4 220 58.2
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 4.8e-56 221.9 218 56.4
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 4.8e-56 221.9 217 59.9
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 1.1e-55 220.7 174 67.8
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 1.1e-55 220.7 152 74.3
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 2.4e-55 219.5 217 58.5
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 4.1e-55 218.8 223 55.2
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 4.1e-55 218.8 226 58.0
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 6.9e-55 218.0 224 54.9
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 6.9e-55 218.0 239 53.6
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 1.5e-54 216.9 223 56.5
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 1.5e-54 216.9 222 55.4
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 1.5e-54 216.9 213 56.8
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.5e-54 216.9 219 58.4
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.6e-54 216.1 227 54.6
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 4.5e-54 215.3 219 58.0
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 1.0e-53 214.2 217 57.1
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.3e-53 213.8 219 57.5
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.3e-53 213.8 217 58.5
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 1.7e-53 213.4 153 71.2
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.7e-53 213.4 227 54.6
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 2.2e-53 213.0 225 53.8
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.2e-53 213.0 221 54.8
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 8.5e-53 211.1 222 55.4
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 1.4e-52 210.3 216 56.5
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 1.9e-52 209.9 224 53.6
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 1.9e-52 209.9 173 63.6
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.5e-52 209.5 216 55.1
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 2.5e-52 209.5 224 53.1
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 3.2e-52 209.1 223 56.1
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 5.5e-52 208.4 216 55.1
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 5.5e-52 208.4 219 55.3
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 7.2e-52 208.0 219 55.3
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 7.2e-52 208.0 219 54.8
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 7.2e-52 208.0 213 56.3
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 9.4e-52 207.6 191 59.2
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.6e-51 206.8 170 65.3
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 1.6e-51 206.8 225 55.6
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 2.1e-51 206.5 200 57.5
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.7e-51 206.1 216 54.6
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 3.6e-51 205.7 187 60.4
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 6.1e-51 204.9 232 53.4
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 6.1e-51 204.9 216 55.6
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 6.1e-51 204.9 216 56.0
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 7.9e-51 204.5 221 55.7
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.0e-50 204.1 159 67.3
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 1.4e-50 203.8 225 56.0
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 2.3e-50 203.0 154 66.9
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 3.0e-50 202.6 214 53.7
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 3.0e-50 202.6 220 56.4
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 5.1e-50 201.8 157 68.2
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 6.7e-50 201.4 208 55.3
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 6.7e-50 201.4 226 53.1
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 1.1e-49 200.7 248 48.4
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 2.5e-49 199.5 215 54.0
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 3.3e-49 199.1 216 53.2
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 2.2e-48 196.4 179 58.7
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 6.3e-48 194.9 210 54.3
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 8.2e-48 194.5 220 53.2
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 8.2e-48 194.5 221 52.0
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.1e-47 194.1 213 53.5
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.4e-47 193.0 158 63.9
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 2.4e-47 193.0 219 53.0
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 1.2e-46 190.7 169 59.2
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 1.2e-46 190.7 221 52.0
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 1.5e-46 190.3 157 62.4
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 2.0e-46 189.9 221 52.9
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 3.4e-46 189.1 205 55.6
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 4.5e-46 188.7 219 50.2
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 5.9e-46 188.3 145 69.0
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 5.9e-46 188.3 223 50.7
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 1.7e-45 186.8 157 61.8
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 2.9e-45 186.0 169 57.4
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 2.9e-45 186.0 144 68.8
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 3.8e-45 185.7 275 44.0
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 5.0e-45 185.3 169 59.2
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 5.5e-44 181.8 184 55.4
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 5.5e-44 181.8 199 52.3
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 5.5e-44 181.8 153 62.7
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 7.2e-44 181.4 199 52.3
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 9.4e-44 181.0 217 49.3
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 9.4e-44 181.0 199 51.8
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 1.2e-43 180.6 185 55.7
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 1.6e-43 180.3 199 52.3
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 1.6e-43 180.3 199 52.3
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 2.1e-43 179.9 157 60.5
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 4.7e-43 178.7 152 61.8
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 6.1e-43 178.3 185 54.1
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 7.9e-43 177.9 219 50.7
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 1.0e-42 177.6 184 54.9
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 3.0e-42 176.0 154 61.7
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 1.1e-39 167.5 183 52.5
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 1.2e-38 164.1 181 53.6
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 6.5e-37 158.3 149 59.7
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 1.9e-36 156.8 205 45.9
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 2.5e-36 156.4 180 53.9
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.5e-36 156.4 171 50.3
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 2.1e-35 153.3 128 65.6
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 3.6e-35 152.5 188 48.9
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 2.0e-33 146.7 115 70.4
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 6.3e-32 141.7 217 43.8
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 1.8e-31 140.2 169 50.3
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 4.1e-31 139.0 145 55.2
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 9.1e-31 137.9 144 56.2
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 2.7e-30 136.3 124 61.3
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 2.5e-28 129.8 149 50.3
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 1.2e-27 127.5 113 63.7
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 3.0e-26 122.9 212 39.6
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 6.8e-26 121.7 150 56.0
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 7.5e-25 118.2 95 67.4
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 1.7e-24 117.1 168 45.2
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 3.7e-24 115.9 85 63.5
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 3.1e-23 112.8 150 48.7
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 5.4e-23 112.1 178 42.7
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 5.9e-22 108.6 145 46.2
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 7.7e-22 108.2 159 46.5
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 1.7e-21 107.1 183 40.4
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 1.5e-20 104.0 145 51.0
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 9.4e-20 101.3 79 70.9
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 4.7e-19 99.0 147 43.5
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 4.7e-19 99.0 147 47.6
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 1.0e-18 97.8 85 65.9
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 4.0e-18 95.9 199 38.7
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 6.8e-18 95.1 170 38.8
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 1.6e-14 84.0 108 54.6
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 1.7e-13 80.5 113 50.4
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 1.9e-12 77.0 51 70.6
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 1.9e-12 77.0 119 47.9
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 1.8e-10 70.5 130 37.7
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-10 70.1 75 48.0
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 2.3e-10 70.1 88 44.3
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 3.0e-10 69.7 136 38.2
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 3.7e-08 62.8 109 46.8
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 5.4e-07 58.9 166 31.3
PRCOL_00004960 Prasinoderma coloniale HOM05D005311 ORTHO05D006160 5.4e-07 58.9 159 31.4
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.0e-06 57.0 42 64.3


User provided reference genes

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