Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 3.3e-303 1044.3 539 100.0
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 1.1e-277 959.5 539 91.5
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 2.7e-273 944.9 539 90.5
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 1.7e-267 925.6 571 83.0
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 4.4e-263 911.0 538 83.8
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 2.2e-262 908.7 538 84.2
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 4.1e-261 904.4 538 85.7
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 7.0e-261 903.7 538 84.4
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 2.6e-260 901.7 538 85.7
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 2.6e-260 901.7 538 84.2
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 1.7e-259 899.0 538 84.4
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 2.9e-259 898.3 535 82.4
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 1.1e-258 896.3 538 84.6
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 6.1e-257 890.6 538 80.3
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 8.0e-257 890.2 538 84.8
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.4e-256 889.4 538 85.1
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 1.8e-256 889.0 538 80.7
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 3.0e-256 888.3 538 79.9
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 6.7e-256 887.1 538 79.7
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 1.5e-255 885.9 538 80.5
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 1.5e-255 885.9 537 84.9
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 3.3e-255 884.8 538 79.6
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 5.7e-255 884.0 560 81.1
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 5.7e-255 884.0 538 83.5
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 7.5e-255 883.6 538 83.6
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 7.5e-255 883.6 538 83.6
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 4.8e-254 880.9 538 84.2
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 8.2e-254 880.2 538 82.9
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 1.8e-253 879.0 538 81.0
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 1.8e-253 879.0 538 78.8
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 2.4e-253 878.6 538 80.1
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.0e-251 873.2 536 78.2
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 1.0e-251 873.2 538 83.3
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 1.0e-251 873.2 537 83.6
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 2.9e-251 871.7 538 83.1
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 6.5e-251 870.5 539 83.3
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 8.5e-251 870.2 539 83.3
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 1.1e-250 869.8 538 78.4
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 4.2e-250 867.8 538 83.1
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.6e-249 865.9 538 79.4
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 4.7e-249 864.4 538 82.5
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 8.0e-249 863.6 537 79.7
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 1.0e-248 863.2 598 72.6
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 1.4e-248 862.8 533 82.7
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 1.4e-248 862.8 598 72.4
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 4.0e-248 861.3 533 82.7
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 2.0e-247 859.0 538 79.2
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 2.6e-247 858.6 538 77.7
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 2.6e-247 858.6 538 77.7
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 2.6e-247 858.6 535 78.5
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 3.4e-247 858.2 538 80.1
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 5.7e-247 857.4 538 79.6
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 9.8e-247 856.7 538 82.2
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 2.2e-246 855.5 538 77.5
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 2.2e-246 855.5 538 77.5
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 2.2e-246 855.5 537 81.4
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 1.8e-245 852.4 538 79.0
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 5.4e-245 850.9 537 79.7
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 5.4e-245 850.9 538 80.5
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 1.2e-244 849.7 538 81.0
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 5.9e-244 847.4 538 77.3
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 1.7e-243 845.9 576 74.5
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 3.8e-243 844.7 531 80.8
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 6.5e-243 844.0 538 79.9
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 1.9e-242 842.4 533 76.5
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 5.5e-242 840.9 538 80.1
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 1.2e-241 839.7 538 78.4
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 1.6e-241 839.3 538 78.3
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 4.7e-241 837.8 538 79.9
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 1.3e-238 829.7 538 78.4
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 3.7e-238 828.2 537 76.7
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 4.9e-238 827.8 529 81.5
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 2.4e-237 825.5 538 80.3
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 3.1e-237 825.1 536 76.5
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 2.3e-235 818.9 600 72.8
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 3.0e-232 808.5 551 74.4
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 1.3e-230 803.1 534 74.9
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 9.2e-229 797.0 629 66.0
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.1e-226 790.0 538 74.0
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 2.8e-225 785.4 539 77.7
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 1.2e-223 780.0 550 76.4
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 9.8e-223 776.9 533 73.2
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 9.5e-218 760.4 540 71.7
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 7.5e-215 750.7 521 72.9
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 2.7e-212 742.3 530 67.9
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 3.5e-212 741.9 530 70.2
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 6.0e-212 741.1 549 69.9
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 1.9e-210 736.1 538 70.6
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 9.5e-210 733.8 453 83.2
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 9.9e-199 697.2 538 71.9
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 3.4e-191 672.2 755 51.4
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 2.4e-189 666.0 400 79.8
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 9.3e-189 664.1 540 65.6
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 2.1e-188 662.9 579 59.1
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 1.8e-184 649.8 377 83.6
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 3.1e-184 649.0 376 83.5
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 9.3e-181 637.5 535 63.2
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 7.4e-178 627.9 534 56.7
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 1.6e-177 626.7 440 70.7
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 6.5e-174 614.8 536 56.3
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 1.4e-160 570.5 364 75.5
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 1.1e-157 560.8 530 52.5
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 3.5e-151 539.3 389 71.0
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 1.1e-144 517.7 496 53.0
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 3.3e-138 496.1 367 65.7
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.7e-137 493.8 338 68.3
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 7.2e-133 478.4 490 53.1
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 1.7e-121 440.7 269 81.0
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 4.7e-116 422.5 270 75.2
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 3.0e-110 403.3 386 59.3
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 1.5e-109 401.0 629 37.0
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 4.4e-106 389.4 325 64.9
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 1.2e-98 364.8 220 78.2
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 6.6e-94 349.0 272 65.4
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 8.4e-81 305.4 401 41.6
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 8.1e-68 262.3 192 70.3
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 2.4e-67 260.8 152 86.8
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 4.0e-67 260.0 158 79.1
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 1.0e-65 255.4 601 29.0
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.5e-64 250.8 234 57.7
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 3.2e-64 250.4 546 30.6
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.1e-61 241.9 152 77.6
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 5.7e-61 239.6 156 75.6
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 4.5e-58 229.9 139 82.0
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 1.1e-53 215.3 171 65.5
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 1.8e-51 208.0 825 23.3
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.4e-51 207.6 155 70.3
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 9.0e-51 205.7 155 69.7
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 6.1e-47 193.0 229 43.7
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 3.9e-46 190.3 238 48.7
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 5.1e-46 189.9 163 55.8
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.5e-45 188.3 109 84.4
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 4.1e-43 180.3 136 66.9
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 4.7e-39 166.8 134 61.9
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 1.1e-37 162.2 189 49.7
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 5.3e-35 153.3 85 89.4
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 7.7e-34 149.4 110 74.5
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 8.6e-09 66.2 53 60.4
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 1.6e-07 62.0 109 37.6
SGA_v2.0_scaffold16G07518 Striga asiatica HOM05D005139 ORTHO05D006125 3.0e-06 57.8 111 32.4
PGSC0003DMG400002563 Solanum tuberosum HOM05D003301 ORTHO05D003665 4.0e-06 57.4 197 22.8
ClCG07G010240 Citrullus lanatus HOM05D005139 ORTHO05D006125 5.2e-06 57.0 70 52.9


User provided reference genes

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