Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 1.9e-284 981.9 514 100.0
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 2.6e-217 758.8 562 73.5
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 2.2e-203 712.6 549 72.5
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 8.3e-203 710.7 475 78.9
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 1.9e-167 593.2 528 62.9
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 1.1e-165 587.4 531 59.7
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 4.0e-165 585.5 530 60.6
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 4.0e-165 585.5 544 60.5
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 8.9e-165 584.3 529 60.7
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 2.2e-163 579.7 530 59.4
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 2.9e-163 579.3 525 61.1
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 4.9e-163 578.6 539 59.9
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 1.1e-162 577.4 566 58.0
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.9e-162 576.6 552 58.7
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.4e-162 576.2 528 59.8
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 2.4e-162 576.2 533 60.2
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 3.2e-162 575.9 528 60.0
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 5.4e-162 575.1 544 59.0
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 7.8e-161 571.2 524 59.2
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 7.8e-161 571.2 456 64.9
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 1.7e-160 570.1 526 59.5
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 2.3e-160 569.7 556 57.9
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 2.3e-160 569.7 528 60.0
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 8.6e-160 567.8 523 59.3
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 1.1e-159 567.4 562 56.0
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 3.3e-159 565.8 529 57.5
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 9.6e-159 564.3 456 64.0
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 2.1e-158 563.1 456 64.0
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 4.7e-158 562.0 456 63.8
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 6.2e-158 561.6 531 59.3
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 8.1e-158 561.2 524 59.0
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 1.1e-157 560.8 507 59.8
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.8e-157 560.1 465 63.2
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.8e-157 560.1 538 56.9
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 5.2e-157 558.5 505 61.0
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 6.8e-157 558.1 518 60.2
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 8.9e-157 557.8 526 58.0
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 1.2e-156 557.4 512 59.8
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 1.2e-156 557.4 539 57.0
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 2.6e-156 556.2 523 58.9
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 3.4e-156 555.8 526 58.6
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 7.6e-156 554.7 456 63.8
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 9.9e-156 554.3 528 58.1
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 1.3e-155 553.9 521 57.8
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 2.2e-155 553.1 524 57.8
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 2.2e-155 553.1 527 57.3
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 2.9e-155 552.7 524 57.6
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 3.8e-155 552.4 538 57.2
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 8.4e-155 551.2 524 57.4
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 1.1e-154 550.8 446 65.0
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 1.1e-154 550.8 528 57.2
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 7.1e-154 548.1 524 57.3
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 9.3e-154 547.7 536 58.4
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 9.3e-154 547.7 477 61.8
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 1.2e-153 547.4 524 57.3
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 1.6e-153 547.0 533 56.3
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 3.5e-153 545.8 456 62.7
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 3.5e-153 545.8 544 55.5
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 4.6e-153 545.4 534 57.1
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 1.0e-152 544.3 537 57.7
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.0e-152 544.3 492 59.1
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 1.3e-152 543.9 534 57.5
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 7.3e-151 538.1 522 56.5
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 8.1e-150 534.6 469 59.5
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 4.0e-149 532.3 521 55.7
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 2.0e-148 530.0 559 53.1
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 3.4e-148 529.3 550 55.3
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.9e-147 525.4 518 57.1
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.9e-147 525.4 518 57.1
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 6.4e-147 525.0 505 58.0
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.9e-146 523.5 518 57.1
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 2.4e-146 523.1 494 59.1
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.2e-146 522.7 518 57.1
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 4.2e-146 522.3 537 55.7
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 4.2e-146 522.3 434 63.1
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 1.2e-145 520.8 541 55.6
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 1.2e-145 520.8 564 52.1
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.5e-145 519.2 517 56.7
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.6e-145 518.8 518 56.9
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 6.6e-144 515.0 511 55.4
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 4.3e-143 512.3 528 56.1
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 9.6e-143 511.1 452 59.7
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 9.6e-143 511.1 545 53.8
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 1.6e-142 510.4 433 61.9
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 2.1e-142 510.0 525 55.4
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 5.3e-141 505.4 525 55.2
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 3.4e-140 502.7 593 49.4
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 3.8e-139 499.2 525 54.5
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 3.2e-138 496.1 572 50.3
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 3.5e-137 492.7 466 57.3
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 4.6e-137 492.3 540 52.6
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 6.0e-137 491.9 557 51.9
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 5.6e-135 485.3 373 66.0
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 2.1e-134 483.4 665 45.0
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 2.0e-132 476.9 412 60.7
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 5.8e-132 475.3 435 58.2
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 1.9e-130 470.3 527 50.7
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 2.4e-125 453.4 352 66.5
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 5.3e-125 452.2 327 69.4
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 6.9e-125 451.8 358 66.2
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 5.8e-124 448.7 544 50.6
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 2.2e-123 446.8 515 48.5
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 3.2e-122 443.0 516 51.9
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 2.1e-121 440.3 531 48.6
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 6.1e-121 438.7 414 56.8
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.2e-116 424.5 462 51.9
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 5.1e-112 409.1 548 44.7
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 8.0e-97 358.6 307 61.2
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 8.2e-94 348.6 305 61.0
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 1.5e-90 337.8 517 44.7
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 2.5e-90 337.0 530 43.6
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 5.5e-90 335.9 369 50.9
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 1.1e-85 321.6 259 62.5
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 5.0e-83 312.8 275 55.6
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.2e-70 270.8 228 64.0
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 1.8e-64 251.1 326 42.3
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 2.2e-62 244.2 416 38.9
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 3.1e-56 223.8 303 43.6
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 3.4e-55 220.3 338 38.2
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 4.9e-38 163.3 223 43.9
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 5.6e-34 149.8 172 50.0
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 1.3e-33 148.7 208 36.5
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.6e-33 148.3 95 75.8
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 2.8e-33 147.5 206 44.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 2.9e-22 110.9 62 80.6
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 7.4e-18 96.3 81 54.3
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.6e-17 95.1 129 51.2
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 3.7e-17 94.0 110 47.3
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 2.0e-15 88.2 83 51.8
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 9.0e-08 62.8 68 51.5


User provided reference genes

Program Settings