Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1671.8 804 100.0
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1473.8 807 86.9
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1453.7 806 86.6
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1244.2 807 74.1
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1204.5 808 71.8
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1200.7 822 70.2
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1181.4 805 69.9
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1172.1 808 70.0
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1169.1 843 68.0
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1168.7 806 69.7
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1167.9 808 69.7
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1166.4 805 69.6
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1166.4 807 69.6
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1166.0 806 70.0
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1164.1 808 69.8
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1160.2 804 69.3
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1159.4 807 69.9
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1159.1 807 68.2
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1157.1 804 68.3
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1154.4 843 67.4
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1153.3 810 68.8
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1151.0 806 69.4
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1148.7 854 66.5
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1148.3 807 69.8
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1147.1 805 68.8
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1146.3 807 69.5
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1146.0 804 68.3
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1141.7 819 67.9
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1141.3 806 68.0
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1139.4 807 69.3
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1134.8 807 68.0
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1134.0 806 67.7
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1129.0 807 67.7
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1127.1 807 67.8
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 0.0e+00 1126.3 807 67.8
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1125.9 806 66.0
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1125.9 841 65.4
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1122.1 807 67.5
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1121.7 806 67.2
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1119.8 805 67.3
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1112.1 776 69.3
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1109.4 806 66.5
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1105.9 804 67.4
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1103.6 804 66.3
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1102.8 757 70.8
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1102.8 808 65.8
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1100.5 815 65.2
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1099.0 804 66.0
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1098.2 804 66.0
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1098.2 811 65.4
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1097.0 838 65.2
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1095.9 815 66.1
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1095.5 805 65.3
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1095.1 886 62.2
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1082.0 804 65.3
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 1.1e-311 1072.8 849 61.7
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 6.6e-308 1060.4 804 64.6
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.1e-307 1059.7 803 63.4
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 2.5e-307 1058.5 806 66.3
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 1.1e-305 1053.1 807 63.4
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 5.3e-305 1050.8 806 63.4
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 2.6e-304 1048.5 803 63.5
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 5.8e-304 1047.3 803 63.4
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 1.7e-303 1045.8 802 63.6
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 1.1e-302 1043.1 802 62.7
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 3.3e-299 1031.6 806 62.9
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 3.3e-299 1031.6 802 62.8
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 5.6e-299 1030.8 806 62.9
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 3.7e-298 1028.1 803 62.4
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 4.8e-298 1027.7 803 61.9
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 1.3e-295 1019.6 810 62.2
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 1.3e-295 1019.6 810 62.2
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 1.3e-295 1019.6 807 62.0
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 2.9e-295 1018.5 807 61.7
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 4.6e-293 1011.1 790 62.9
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 6.0e-293 1010.7 849 59.7
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 8.7e-292 1006.9 857 59.2
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 4.0e-289 998.0 800 60.9
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 3.4e-288 995.0 810 60.1
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 1.7e-287 992.6 808 59.7
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 1.9e-283 979.2 810 59.9
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 9.7e-283 976.9 809 58.1
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 1.3e-282 976.5 803 60.0
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 5.1e-276 954.5 805 58.8
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 2.2e-271 939.1 720 64.9
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 1.4e-268 929.9 708 65.7
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 8.0e-261 904.0 738 60.8
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.9e-246 856.3 599 68.1
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 1.3e-239 833.6 622 66.2
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 3.4e-235 818.9 808 51.4
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 3.7e-234 815.5 616 66.1
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 2.8e-221 772.7 624 59.0
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 3.2e-209 732.6 829 46.9
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 1.3e-197 694.1 830 45.5
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 1.4e-196 690.6 608 57.6
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 4.8e-189 665.6 831 44.5
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 7.9e-176 621.7 457 67.2
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 9.3e-169 598.2 530 56.6
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 5.1e-159 565.8 451 61.9
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 5.5e-145 519.2 588 45.9
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 6.8e-135 485.7 447 53.9
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 3.4e-134 483.4 457 52.5
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 8.5e-130 468.8 399 60.9
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.5e-129 467.2 466 50.9
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 3.6e-128 463.4 313 69.6
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 2.6e-126 457.2 375 61.1
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 2.1e-104 384.4 339 59.3
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 5.6e-89 333.2 190 77.9
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 8.7e-82 309.3 307 55.7
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.4e-79 301.2 273 52.7
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 6.2e-72 276.6 238 60.9
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 2.4e-71 274.6 494 35.8
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 1.7e-69 268.5 145 82.1
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 4.5e-62 243.8 149 72.5
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 7.2e-52 209.9 123 69.9
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 1.0e-50 206.1 194 50.0
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 1.0e-45 189.5 853 24.7
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.9e-44 185.3 192 50.0
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 4.6e-43 180.6 143 56.6
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 8.8e-34 149.8 92 69.6
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 6.3e-32 143.7 83 78.3
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 4.2e-20 104.4 196 34.2
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 1.2e-19 102.8 52 82.7
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 2.2e-13 82.0 92 44.6
MCO09G352 Micromonas commoda HOM05D006313 ORTHO05D007853 6.3e-08 63.9 184 28.8
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 2.4e-07 62.0 52 57.7
Pp3c19_11580 Physcomitrium patens HOM05D001597 ORTHO05D001512 7.0e-07 60.5 243 26.7


User provided reference genes

Program Settings