Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 0.0e+00 1148.3 620 100.0
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 3.5e-171 605.9 617 58.8
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 1.7e-106 391.0 680 42.2
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 1.1e-100 371.7 747 38.4
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 3.5e-99 366.7 672 41.2
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 1.3e-96 358.2 733 38.3
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 1.4e-95 354.8 597 42.5
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 6.9e-95 352.4 711 37.7
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 2.6e-94 350.5 664 39.0
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 9.9e-94 348.6 695 37.3
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 8.4e-93 345.5 654 39.1
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 8.4e-93 345.5 605 39.8
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 1.9e-92 344.4 628 40.4
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 7.1e-92 342.4 639 39.0
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 9.3e-92 342.0 625 41.6
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 9.3e-92 342.0 622 40.4
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 1.6e-91 341.3 625 40.3
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 2.3e-90 337.4 655 38.6
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 3.9e-90 336.7 381 54.9
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 5.6e-89 332.8 651 38.9
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 7.4e-89 332.4 633 38.2
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 1.3e-88 331.6 522 42.1
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 2.8e-88 330.5 618 38.2
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.4e-87 328.2 662 42.0
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 1.4e-87 328.2 699 37.3
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 2.4e-87 327.4 591 40.1
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 1.5e-86 324.7 618 37.7
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 3.4e-86 323.6 370 51.1
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 3.4e-86 323.6 621 40.1
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 5.8e-86 322.8 612 40.5
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 1.7e-85 321.2 715 37.9
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 2.9e-85 320.5 675 37.0
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 3.8e-85 320.1 646 38.9
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 1.9e-84 317.8 611 39.8
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 2.5e-84 317.4 613 39.6
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 4.2e-84 316.6 695 36.4
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 9.3e-84 315.5 669 37.8
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.2e-83 315.1 613 39.2
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 1.2e-83 315.1 702 36.2
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 2.1e-83 314.3 613 40.0
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 3.5e-83 313.5 702 35.9
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 7.9e-83 312.4 665 35.9
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 1.3e-82 311.6 706 35.6
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 2.3e-82 310.8 675 36.3
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 3.0e-82 310.5 575 39.0
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 5.1e-82 309.7 614 40.6
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 5.1e-82 309.7 620 37.7
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 1.9e-81 307.8 609 37.8
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 3.3e-81 307.0 669 36.8
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 6.3e-80 302.8 645 37.5
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.4e-79 301.6 623 38.5
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 6.9e-79 299.3 623 37.4
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 4.5e-78 296.6 586 39.2
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 5.9e-78 296.2 519 40.5
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 5.9e-78 296.2 668 36.5
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 7.6e-78 295.8 657 35.9
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 2.5e-76 290.8 656 37.0
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 7.2e-76 289.3 644 37.1
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 1.2e-75 288.5 535 40.9
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 2.1e-75 287.7 601 37.6
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 2.7e-75 287.3 490 38.4
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 4.6e-75 286.6 640 37.3
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 7.9e-75 285.8 555 38.9
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 1.0e-74 285.4 494 40.1
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 2.3e-74 284.3 624 37.5
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 3.0e-74 283.9 479 40.9
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 1.5e-73 281.6 489 41.7
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 4.3e-73 280.0 611 37.3
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 1.3e-72 278.5 442 42.3
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 2.8e-72 277.3 627 36.0
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 2.8e-72 277.3 654 35.6
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 2.8e-72 277.3 654 35.6
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 3.7e-72 276.9 659 35.5
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 6.3e-72 276.2 660 35.3
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 1.1e-71 275.4 665 35.2
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 1.4e-71 275.0 632 35.1
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 4.1e-71 273.5 680 34.3
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 4.5e-70 270.0 564 38.1
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 2.2e-69 267.7 680 34.3
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 6.5e-69 266.2 548 37.2
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 8.5e-69 265.8 406 42.9
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 2.7e-67 260.8 452 43.8
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 6.1e-67 259.6 636 35.1
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 9.4e-60 235.7 411 41.8
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 5.2e-58 229.9 520 36.3
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 3.1e-55 220.7 397 39.5
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 6.5e-53 213.0 262 49.2
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 2.1e-51 208.0 715 29.9
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 3.6e-51 207.2 315 42.9
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 1.2e-46 192.2 341 37.5
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 1.3e-45 188.7 265 43.4
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 9.4e-44 182.6 500 31.0
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 1.6e-43 181.8 463 35.0
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 2.1e-43 181.4 568 28.0
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 1.8e-42 178.3 369 37.7
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 4.0e-42 177.2 334 38.3
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.8e-39 168.3 383 35.8
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 7.0e-39 166.4 624 28.7
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 1.6e-35 155.2 537 29.2
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 8.8e-34 149.4 246 41.5
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 9.8e-33 146.0 254 42.9
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 1.7e-32 145.2 213 40.4
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 1.2e-30 139.0 324 36.1
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 2.0e-30 138.3 347 34.6
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 2.7e-30 137.9 214 43.9
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 5.0e-29 133.7 264 39.4
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 1.5e-28 132.1 270 37.8
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 4.4e-25 120.6 178 47.2
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 1.1e-23 115.9 245 35.9
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 2.7e-22 111.3 111 58.6
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 5.4e-15 87.0 213 34.7
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 2.0e-14 85.1 66 63.6
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 3.5e-14 84.3 177 39.5
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 7.8e-14 83.2 149 36.9
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 4.0e-10 70.9 262 26.0
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 9.2e-07 59.7 40 70.0


User provided reference genes

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