Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 3.8e-117 424.9 217 100.0
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 7.5e-81 304.3 186 85.5
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 3.9e-77 292.0 157 93.0
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 1.9e-76 289.7 157 92.4
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.2e-67 260.4 161 79.5
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 1.2e-67 260.4 154 81.8
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 3.6e-67 258.8 154 83.8
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 4.7e-67 258.5 157 80.3
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 6.2e-67 258.1 157 80.9
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 1.1e-66 257.3 160 78.8
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 1.8e-66 256.5 154 81.2
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.8e-66 256.5 154 81.8
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 2.3e-66 256.1 154 81.8
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 4.0e-66 255.4 154 81.2
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 5.2e-66 255.0 154 81.2
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 6.8e-66 254.6 154 79.9
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.5e-65 253.4 157 79.0
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 2.6e-65 252.7 154 81.2
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 2.6e-65 252.7 162 77.2
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 3.4e-65 252.3 160 79.4
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 5.8e-65 251.5 160 76.9
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 5.8e-65 251.5 160 76.9
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 7.6e-65 251.1 158 79.1
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 7.6e-65 251.1 154 80.5
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 7.6e-65 251.1 158 76.6
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 9.9e-65 250.8 155 78.1
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 9.9e-65 250.8 162 76.5
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 1.3e-64 250.4 154 79.9
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.3e-64 250.4 155 79.4
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 1.3e-64 250.4 158 77.2
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.7e-64 250.0 154 79.9
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.2e-64 249.6 154 79.2
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.2e-64 249.6 153 80.4
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.2e-64 249.6 153 80.4
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 2.2e-64 249.6 154 78.6
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.2e-64 249.6 157 79.0
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.8e-64 248.8 154 79.9
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 1.4e-63 246.9 157 77.7
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.4e-63 246.9 160 76.9
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 1.9e-63 246.5 186 68.8
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.9e-63 246.5 164 75.0
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 3.2e-63 245.7 157 76.4
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 3.2e-63 245.7 154 76.0
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.2e-63 245.7 154 77.9
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 4.1e-63 245.4 158 76.6
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.1e-63 245.4 158 76.6
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.1e-63 245.4 158 76.6
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.1e-63 245.4 158 76.6
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.1e-63 245.4 158 76.6
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.1e-63 245.4 158 76.6
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 5.4e-63 245.0 157 76.4
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 5.4e-63 245.0 154 77.9
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 5.4e-63 245.0 157 76.4
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 7.1e-63 244.6 154 78.6
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 7.1e-63 244.6 154 75.3
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 7.1e-63 244.6 157 76.4
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 9.2e-63 244.2 157 73.9
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 1.6e-62 243.4 154 76.0
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.1e-62 243.0 154 76.6
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.7e-62 242.7 137 87.6
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 4.6e-62 241.9 160 74.4
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 7.8e-62 241.1 155 76.1
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 7.8e-62 241.1 154 78.6
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 7.8e-62 241.1 156 76.9
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 7.8e-62 241.1 156 76.9
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 1.7e-61 240.0 151 78.8
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 1.7e-61 240.0 183 69.9
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.3e-61 239.6 155 74.2
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 3.9e-61 238.8 154 77.3
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 5.1e-61 238.4 157 73.9
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 5.1e-61 238.4 148 81.8
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 5.1e-61 238.4 153 77.1
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 6.6e-61 238.0 160 73.1
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 6.6e-61 238.0 157 73.2
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 8.6e-61 237.7 155 73.5
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 8.6e-61 237.7 153 77.1
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 1.1e-60 237.3 157 72.6
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.1e-60 237.3 160 71.2
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.5e-60 236.9 154 77.9
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.9e-60 236.5 154 72.7
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 2.5e-60 236.1 157 72.6
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 3.3e-60 235.7 156 74.4
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 7.3e-60 234.6 157 72.0
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 7.3e-60 234.6 154 76.6
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 9.6e-60 234.2 154 75.3
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 2.1e-59 233.0 155 75.5
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 2.1e-59 233.0 154 76.0
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 3.6e-59 232.3 154 73.4
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 3.6e-59 232.3 154 73.4
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 3.6e-59 232.3 156 74.4
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 6.2e-59 231.5 154 76.0
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 1.1e-58 230.7 154 75.3
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.8e-58 229.9 157 74.5
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 1.8e-58 229.9 157 74.5
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 1.8e-58 229.9 161 70.8
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.8e-58 229.9 161 70.8
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 1.8e-58 229.9 161 70.8
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 1.8e-58 229.9 161 70.8
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.8e-58 229.9 161 70.8
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 4.0e-58 228.8 189 62.4
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 5.2e-58 228.4 160 70.6
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 5.2e-58 228.4 162 69.8
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 8.9e-58 227.6 160 70.6
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 1.2e-57 227.3 160 70.0
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 1.5e-57 226.9 159 69.2
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 1.5e-57 226.9 159 69.2
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 1.5e-57 226.9 159 69.2
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 2.6e-57 226.1 153 69.9
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 7.6e-57 224.6 154 70.1
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 4.9e-56 221.9 137 79.6
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 1.1e-55 220.7 154 68.8
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 3.2e-55 219.2 143 76.9
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 7.1e-55 218.0 244 50.8
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 2.1e-54 216.5 136 77.9
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 2.1e-54 216.5 203 56.7
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 2.7e-54 216.1 144 73.6
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.7e-53 213.4 123 85.4
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.5e-52 210.3 144 72.2
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 6.9e-50 201.4 213 52.6
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 2.6e-49 199.5 125 77.6
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.4e-49 199.1 155 65.2
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 8.4e-48 194.5 156 63.5
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 1.2e-46 190.7 187 55.6
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 1.6e-46 190.3 161 59.6
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 3.5e-46 189.1 123 77.2
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 2.8e-43 179.5 111 75.7
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 8.1e-43 177.9 297 39.7
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 6.4e-40 168.3 142 66.2
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.6e-35 153.7 93 79.6
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 8.1e-35 151.4 107 72.9
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.8e-34 150.2 133 57.9
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 4.9e-32 142.1 101 70.3
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 7.1e-31 138.3 154 46.8
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 3.9e-29 132.5 132 53.0
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 2.5e-28 129.8 77 77.9
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 7.4e-28 128.3 149 46.3
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.6e-27 127.1 149 45.6
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 5.3e-26 122.1 152 42.1
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 4.5e-25 119.0 146 51.4
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 2.2e-24 116.7 138 45.7
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 2.9e-24 116.3 85 67.1
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.5e-23 112.1 65 83.1
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 1.2e-22 110.9 65 81.5
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.6e-22 109.4 96 62.5
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.6e-22 109.4 96 62.5
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 2.3e-21 106.7 64 81.2
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 3.9e-21 105.9 146 40.4
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.3e-20 102.8 64 78.1
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 4.3e-20 102.4 127 43.3
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 1.2e-17 94.4 101 55.4
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 2.0e-17 93.6 78 62.8
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 1.3e-08 64.3 69 53.6
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 3.8e-08 62.8 69 52.2
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 9.4e-07 58.2 62 53.2


User provided reference genes

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