Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 5.6e-171 604.4 343 100.0
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 2.1e-138 496.1 344 79.4
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 1.2e-120 437.2 341 74.8
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.6e-106 390.2 350 65.4
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 7.7e-104 381.3 352 63.9
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 8.5e-103 377.9 347 62.8
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.7e-101 372.9 349 61.6
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 4.6e-101 372.1 349 61.6
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 6.3e-98 361.7 346 62.7
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 1.4e-97 360.5 354 59.3
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 2.4e-97 359.8 354 60.2
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 2.4e-97 359.8 363 61.2
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 5.3e-97 358.6 354 59.6
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 5.3e-97 358.6 352 61.4
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.0e-95 354.4 356 61.0
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 1.3e-95 354.0 352 60.5
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 1.3e-95 354.0 353 59.5
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 2.2e-95 353.2 351 60.4
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 2.2e-95 353.2 354 59.9
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 2.9e-95 352.8 346 60.7
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 1.1e-94 350.9 347 60.5
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 1.4e-94 350.5 354 59.3
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 1.2e-93 347.4 353 58.4
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 6.7e-92 341.7 351 58.4
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 1.1e-91 340.9 349 58.2
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.5e-91 340.5 352 59.4
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 2.0e-91 340.1 348 60.1
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 3.3e-91 339.3 351 59.3
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 3.3e-91 339.3 339 59.0
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 5.7e-91 338.6 353 58.6
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.3e-90 337.4 350 58.6
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 1.7e-90 337.0 358 58.4
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 2.2e-90 336.7 354 57.1
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 6.3e-90 335.1 359 58.2
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.1e-89 334.3 349 58.5
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 1.8e-89 333.6 350 57.1
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 3.1e-89 332.8 350 60.0
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 3.1e-89 332.8 356 58.1
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 5.3e-89 332.0 351 59.0
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 9.1e-89 331.3 354 58.2
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 5.9e-88 328.6 359 57.4
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 1.0e-87 327.8 352 58.2
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 1.1e-86 324.3 349 60.5
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 1.4e-86 323.9 351 55.6
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 1.9e-86 323.6 350 57.7
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 7.2e-86 321.6 354 56.5
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 6.1e-85 318.5 352 56.5
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 8.0e-85 318.2 341 56.0
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 2.3e-84 316.6 354 55.4
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 6.7e-84 315.1 358 56.7
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 1.1e-83 314.3 347 55.3
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.5e-83 313.9 358 56.4
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 3.3e-83 312.8 363 55.1
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 4.4e-83 312.4 356 55.9
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 4.4e-83 312.4 356 55.9
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 1.7e-82 310.5 354 55.6
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 1.7e-82 310.5 362 55.5
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 2.2e-82 310.1 350 55.1
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 4.8e-82 308.9 349 55.0
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 4.8e-82 308.9 410 51.2
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 1.4e-81 307.4 350 55.7
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 2.4e-81 306.6 353 55.2
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 4.1e-81 305.8 351 57.0
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 5.3e-81 305.4 352 56.0
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 7.0e-81 305.1 353 55.8
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 1.6e-80 303.9 351 55.8
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 1.6e-80 303.9 346 54.3
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.6e-80 303.9 367 53.7
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 2.0e-80 303.5 351 54.4
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 2.6e-80 303.1 349 55.0
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 4.5e-80 302.4 346 54.3
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.0e-79 301.2 351 53.6
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 1.3e-79 300.8 351 55.0
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 1.7e-79 300.4 349 55.0
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.7e-79 300.4 355 53.2
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 3.2e-78 296.2 349 54.7
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 4.2e-78 295.8 349 54.2
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 4.2e-78 295.8 349 54.7
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 1.2e-77 294.3 351 53.6
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 2.1e-77 293.5 349 53.6
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 2.1e-77 293.5 349 53.6
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 2.1e-77 293.5 420 46.7
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 3.6e-77 292.7 352 54.3
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 3.6e-77 292.7 352 54.3
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 4.4e-75 285.8 354 52.3
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 2.8e-74 283.1 332 52.4
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 8.3e-74 281.6 351 53.6
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 1.1e-73 281.2 373 50.4
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 2.2e-71 273.5 299 56.2
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 3.8e-71 272.7 357 50.7
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 6.5e-71 271.9 340 51.2
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 8.5e-71 271.6 333 52.3
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 2.1e-69 266.9 340 49.4
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 4.4e-67 259.2 378 46.0
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 7.5e-67 258.5 349 48.1
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 6.3e-66 255.4 353 50.4
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.1e-62 244.6 263 55.5
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 6.1e-61 238.8 345 48.1
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 1.1e-54 218.0 325 46.2
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.7e-50 204.1 201 60.2
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 4.9e-50 202.6 143 75.5
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 1.2e-48 198.0 237 53.2
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 2.1e-45 187.2 311 45.0
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 2.8e-45 186.8 184 62.0
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 1.5e-43 181.0 229 48.9
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 4.4e-43 179.5 229 52.8
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 7.3e-38 162.2 295 40.0
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.5e-35 154.5 202 51.5
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 2.0e-35 154.1 185 54.1
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 7.6e-35 152.1 205 54.6
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 6.4e-34 149.1 134 61.9
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 1.4e-33 147.9 377 34.5
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 8.6e-31 138.7 115 66.1
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 1.5e-30 137.9 205 45.4
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 6.8e-28 129.0 308 35.1
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 2.6e-27 127.1 98 67.3
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 1.9e-25 120.9 371 33.7
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 3.3e-22 110.2 146 52.7
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 6.2e-21 105.9 219 39.3
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 4.4e-19 99.8 312 33.0
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 5.8e-19 99.4 71 73.2
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 7.6e-19 99.0 94 58.5
ECA232G2733 Erigeron canadensis HOM05D005714 ORTHO05D006812 1.6e-16 91.3 88 61.4
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 2.3e-15 87.4 109 51.4
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 4.3e-14 83.2 310 30.6
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 4.3e-14 83.2 97 49.5
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 4.0e-12 76.6 77 57.1
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 1.3e-10 71.6 85 51.8
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 3.8e-10 70.1 123 43.1
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.4e-09 68.2 46 73.9
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 5.4e-09 66.2 63 58.7
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 3.3e-06 57.0 244 28.7
FvH4_4g27140 Fragaria vesca HOM05D063885 ORTHO05D046237 7.4e-06 55.8 43 72.1


User provided reference genes

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