Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 4.4e-195 684.5 354 100.0
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 8.6e-175 617.1 355 89.9
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 3.5e-160 568.5 348 86.2
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 1.4e-148 530.0 354 72.0
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 4.4e-147 525.0 354 70.6
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 2.2e-146 522.7 360 71.9
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 5.4e-145 518.1 354 71.8
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 5.1e-143 511.5 354 74.9
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 6.6e-143 511.1 360 71.1
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 8.6e-143 510.8 355 72.1
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 1.1e-142 510.4 353 69.4
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 2.5e-142 509.2 353 70.0
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 2.8e-141 505.8 354 68.4
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 3.6e-141 505.4 358 71.5
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.4e-140 503.4 357 68.3
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 1.8e-140 503.1 353 69.4
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 4.0e-140 501.9 354 68.4
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 1.2e-139 500.4 354 68.6
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 2.0e-139 499.6 354 68.6
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 3.4e-139 498.8 355 70.1
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 5.8e-139 498.0 354 68.4
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 9.9e-139 497.3 354 66.7
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 9.9e-139 497.3 355 71.0
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 2.2e-138 496.1 361 67.3
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 2.9e-138 495.7 358 68.7
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 2.9e-138 495.7 354 69.5
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 2.9e-138 495.7 356 68.0
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 6.4e-138 494.6 353 67.4
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 1.1e-137 493.8 360 65.6
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 1.9e-137 493.0 354 67.8
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 2.4e-137 492.7 358 68.4
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 2.4e-137 492.7 355 68.5
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 2.4e-137 492.7 360 67.8
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 3.2e-137 492.3 358 68.4
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 5.4e-137 491.5 289 81.0
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 5.4e-137 491.5 354 68.4
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 7.1e-137 491.1 354 68.1
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 7.1e-137 491.1 361 66.8
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 9.2e-137 490.7 358 68.2
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 2.1e-136 489.6 354 68.1
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 3.5e-136 488.8 359 67.4
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 7.8e-136 487.6 330 69.1
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 2.3e-135 486.1 353 65.7
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 3.0e-135 485.7 354 66.7
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 3.9e-135 485.3 298 76.5
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 3.9e-135 485.3 353 66.3
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 6.6e-135 484.6 359 65.2
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 8.7e-135 484.2 336 69.6
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 7.3e-134 481.1 355 68.2
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 7.3e-134 481.1 338 71.9
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 9.6e-134 480.7 354 65.8
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 2.1e-133 479.6 354 65.3
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 4.7e-133 478.4 354 65.8
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 4.7e-133 478.4 305 76.4
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 6.2e-133 478.0 405 62.0
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 6.2e-133 478.0 298 72.8
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 8.1e-133 477.6 311 71.4
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 2.4e-132 476.1 300 77.0
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 3.1e-132 475.7 377 68.4
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 6.9e-132 474.6 355 65.6
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 2.0e-131 473.0 355 67.3
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 4.4e-131 471.9 348 67.0
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 9.9e-131 470.7 356 67.4
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 1.3e-130 470.3 354 65.3
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 1.7e-130 469.9 356 64.3
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 3.8e-130 468.8 358 64.0
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 6.4e-130 468.0 357 65.8
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 1.4e-129 466.8 310 72.6
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 5.4e-129 464.9 358 64.8
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 5.4e-129 464.9 310 71.9
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 2.7e-128 462.6 366 63.9
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 1.0e-127 460.7 356 66.9
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 1.3e-127 460.3 356 66.9
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 2.3e-127 459.5 301 72.1
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 1.1e-126 457.2 354 64.7
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 2.5e-126 456.1 299 70.6
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 5.6e-126 454.9 363 63.4
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 2.8e-125 452.6 356 65.2
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 1.8e-124 449.9 297 69.7
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.8e-124 449.9 363 62.8
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 2.4e-124 449.5 336 68.2
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 1.2e-123 447.2 354 65.0
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 2.0e-123 446.4 355 61.1
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 7.6e-123 444.5 376 61.7
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 9.9e-123 444.1 354 62.7
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 2.2e-122 443.0 354 62.7
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 4.9e-122 441.8 309 68.0
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 1.1e-121 440.7 355 65.1
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 4.2e-121 438.7 355 64.2
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 1.2e-120 437.2 355 64.5
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 1.8e-119 433.3 337 64.1
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 3.0e-119 432.6 305 66.9
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 3.9e-119 432.2 305 66.9
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 3.9e-119 432.2 354 63.8
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 6.7e-119 431.4 300 69.3
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 1.1e-118 430.6 308 65.9
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 1.1e-118 430.6 305 66.6
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 1.5e-118 430.3 305 66.6
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 1.5e-118 430.3 305 66.6
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 3.3e-118 429.1 308 66.2
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 7.4e-118 427.9 305 66.6
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 7.4e-118 427.9 308 66.6
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 1.3e-117 427.2 295 72.5
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 1.4e-116 423.7 360 61.9
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 1.4e-116 423.7 359 57.9
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 4.0e-116 422.2 272 71.7
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 1.8e-111 406.8 350 59.7
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 9.6e-110 401.0 308 62.7
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 4.8e-109 398.7 299 65.6
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 2.9e-106 389.4 364 58.2
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 1.0e-103 380.9 300 63.0
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 1.3e-103 380.6 230 79.1
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 1.5e-102 377.1 310 62.6
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 2.8e-101 372.9 290 64.8
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 1.3e-98 364.0 302 58.6
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 2.9e-98 362.8 297 57.2
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 1.9e-97 360.1 318 56.9
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 1.0e-95 354.4 300 55.3
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 3.9e-95 352.4 310 57.7
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 6.7e-95 351.7 302 59.3
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 3.3e-94 349.4 303 58.1
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 3.1e-92 342.8 358 48.6
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 8.5e-90 334.7 289 59.2
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 4.2e-89 332.4 266 63.2
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 1.2e-83 314.3 213 67.6
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 2.0e-75 287.0 275 47.3
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 1.9e-65 253.8 299 42.5
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 8.3e-61 238.4 156 70.5
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 1.7e-58 230.7 144 75.0
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 2.0e-54 217.2 235 47.2
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 1.6e-51 207.6 155 62.6
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 6.4e-45 185.7 201 48.8
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 1.9e-44 184.1 288 43.1
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 9.2e-44 181.8 245 40.0
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 9.2e-44 181.8 145 60.7
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 3.0e-42 176.8 140 62.1
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 5.0e-42 176.0 296 34.5
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 1.1e-41 174.9 296 36.5
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.0e-34 151.8 123 56.9
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 1.7e-34 151.0 153 49.7
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 2.1e-27 127.5 306 35.3
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 3.9e-26 123.2 101 62.4
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 3.9e-26 123.2 79 69.6
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 8.9e-23 112.1 94 56.4
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 2.1e-19 100.9 59 83.1
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 4.3e-17 93.2 62 67.7
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 4.0e-15 86.7 45 84.4
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 4.4e-14 83.2 161 34.2
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 7.6e-14 82.4 54 68.5
Actinidia09820 Actinidia chinensis HOM05D004767 ORTHO05D005674 1.1e-12 78.6 57 61.4
Cc11_g01130 Coffea canephora HOM05D004767 ORTHO05D005674 1.5e-09 68.2 45 68.9
GSVIVG01020113001 Vitis vinifera HOM05D004767 ORTHO05D005674 1.9e-09 67.8 53 67.9
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 7.3e-09 65.9 153 30.7
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 9.6e-09 65.5 268 21.6
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 6.2e-08 62.8 228 22.8
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.8e-07 61.2 115 33.0
COL.COLO4_28084 Corchorus olitorius HOM05D002332 ORTHO05D002509 4.0e-07 60.1 195 25.1
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 2.0e-06 57.8 166 24.7
RcHm_v2.0_Chr5g0032061 Rosa chinensis HOM05D004767 ORTHO05D005674 2.0e-06 57.8 33 69.7
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 3.4e-06 57.0 203 23.6
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 9.9e-06 55.5 120 30.8
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 9.9e-06 55.5 120 30.8


User provided reference genes

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