Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 1.6e-158 562.8 292 100.0
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 2.8e-70 269.6 297 56.9
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.2e-68 264.2 314 54.1
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 6.2e-62 241.9 291 54.6
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 7.6e-52 208.4 336 45.8
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 4.9e-51 205.7 323 45.2
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 4.6e-49 199.1 335 41.8
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 7.8e-49 198.4 335 43.0
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 5.1e-48 195.7 334 41.6
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.2e-46 191.0 339 41.9
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 2.1e-46 190.3 332 41.6
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 1.1e-45 188.0 339 42.2
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.4e-45 186.8 320 42.5
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 8.9e-45 184.9 341 42.2
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 2.6e-44 183.3 325 45.2
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 4.4e-44 182.6 293 47.4
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 9.9e-44 181.4 320 40.9
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 2.2e-43 180.3 341 43.7
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 4.9e-43 179.1 331 42.3
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 6.4e-43 178.7 312 42.9
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 1.1e-42 177.9 305 43.0
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 4.2e-42 176.0 301 44.5
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 4.2e-42 176.0 362 40.9
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 7.1e-42 175.3 360 38.1
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 9.3e-42 174.9 340 39.7
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 1.2e-41 174.5 344 40.7
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 1.2e-41 174.5 336 41.4
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.2e-41 174.5 321 42.1
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.7e-41 173.3 320 41.9
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.5e-41 172.9 316 44.6
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 7.8e-41 171.8 341 41.6
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.0e-40 171.4 326 41.7
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 1.3e-40 171.0 326 41.4
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.3e-40 171.0 317 43.2
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 3.0e-40 169.9 366 38.3
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 8.7e-40 168.3 361 39.6
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.5e-39 167.5 325 42.5
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.5e-39 167.5 323 41.5
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 3.3e-39 166.4 325 40.9
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 5.6e-39 165.6 256 46.5
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 7.3e-39 165.2 328 40.9
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 9.6e-39 164.9 333 40.2
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 2.1e-38 163.7 346 38.4
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 2.1e-38 163.7 326 40.2
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 3.6e-38 162.9 348 39.4
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 3.6e-38 162.9 338 39.9
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.6e-38 162.9 345 40.3
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 4.8e-38 162.5 340 38.2
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 4.8e-38 162.5 340 38.5
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 4.8e-38 162.5 335 39.7
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 8.1e-38 161.8 356 39.9
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 8.1e-38 161.8 323 39.9
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.1e-37 161.4 344 38.1
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.1e-37 161.4 329 40.4
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 1.8e-37 160.6 330 39.1
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 1.8e-37 160.6 336 39.3
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.1e-37 159.8 348 39.4
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 4.0e-37 159.5 306 43.8
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 4.0e-37 159.5 345 39.4
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 6.9e-37 158.7 342 38.0
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 1.5e-36 157.5 352 39.5
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 2.0e-36 157.1 336 40.2
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 2.6e-36 156.8 313 41.2
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 3.4e-36 156.4 311 39.5
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 4.5e-36 156.0 341 40.2
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 5.8e-36 155.6 332 39.8
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 5.8e-36 155.6 329 40.7
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 5.8e-36 155.6 352 36.4
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 7.6e-36 155.2 338 38.5
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 7.6e-36 155.2 324 38.0
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 7.6e-36 155.2 327 40.1
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.3e-35 154.5 341 38.4
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.3e-35 154.5 339 38.6
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 2.2e-35 153.7 303 43.6
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 2.2e-35 153.7 336 38.7
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 2.9e-35 153.3 345 38.0
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.9e-35 153.3 322 39.8
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 3.8e-35 152.9 339 38.9
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 3.8e-35 152.9 323 38.4
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 4.9e-35 152.5 310 42.9
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 4.9e-35 152.5 342 36.0
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 6.4e-35 152.1 359 36.8
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 1.1e-34 151.4 335 38.8
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.1e-34 151.4 342 39.2
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.9e-34 150.6 325 39.4
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.2e-34 149.8 319 39.5
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.2e-34 149.4 350 37.1
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 4.2e-34 149.4 326 38.3
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 5.4e-34 149.1 347 36.3
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 7.1e-34 148.7 280 40.7
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 7.1e-34 148.7 244 45.9
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.6e-33 147.5 321 40.8
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 6.0e-33 145.6 324 38.9
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 6.0e-33 145.6 305 38.4
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.0e-33 145.6 392 34.7
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.0e-32 144.8 405 35.1
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 2.3e-32 143.7 331 38.1
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 3.0e-32 143.3 348 38.5
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 5.1e-32 142.5 304 41.4
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 6.7e-32 142.1 330 38.5
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 8.7e-32 141.7 336 38.1
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 8.7e-32 141.7 318 41.8
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 8.7e-32 141.7 306 39.2
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.5e-31 141.0 335 39.1
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.9e-31 140.6 338 38.2
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 2.5e-31 140.2 339 37.8
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 3.3e-31 139.8 309 40.1
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 3.3e-31 139.8 288 40.6
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.3e-31 139.4 312 40.1
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 9.6e-31 138.3 293 41.6
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.3e-30 137.9 269 40.5
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 1.6e-30 137.5 346 38.2
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 3.7e-30 136.3 250 40.8
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 4.8e-30 136.0 311 39.2
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 4.8e-30 136.0 332 35.8
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 1.4e-29 134.4 348 37.6
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.4e-29 134.4 401 35.4
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 1.8e-29 134.0 307 37.8
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.4e-29 133.7 310 39.7
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 4.0e-29 132.9 313 38.7
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 5.3e-29 132.5 254 42.1
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 1.2e-28 131.3 292 36.3
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 1.3e-27 127.9 324 37.3
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.3e-27 127.9 312 34.9
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.9e-27 126.7 292 39.0
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.9e-26 124.0 328 35.4
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.9e-26 124.0 292 38.4
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 4.2e-26 122.9 306 35.0
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 1.6e-25 120.9 273 38.1
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 4.6e-25 119.4 251 40.2
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 7.9e-25 118.6 320 36.2
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.3e-24 117.9 245 40.4
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 6.7e-24 115.5 293 38.9
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 6.7e-24 115.5 352 33.0
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 8.7e-24 115.2 245 40.0
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.1e-23 114.8 302 32.5
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 3.3e-23 113.2 288 37.2
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 7.4e-23 112.1 279 38.0
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 9.6e-23 111.7 232 42.2
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 1.1e-21 108.2 276 37.3
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 1.4e-21 107.8 166 47.6
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 1.4e-21 107.8 209 39.7
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 2.4e-21 107.1 309 35.0
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 6.9e-21 105.5 254 37.8
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 5.8e-20 102.4 266 34.6
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 3.8e-19 99.8 339 31.9
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 6.5e-19 99.0 303 34.0
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 1.1e-18 98.2 374 32.6
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 1.4e-18 97.8 281 36.3
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 1.9e-18 97.4 285 35.4
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 4.2e-18 96.3 236 36.9
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 5.5e-18 95.9 346 31.8
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 2.1e-17 94.0 209 41.1
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 7.9e-17 92.0 345 29.9
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.3e-16 91.3 207 39.1
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.8e-16 90.9 306 32.0
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.8e-16 90.9 306 32.0
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 8.7e-16 88.6 211 38.9
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 8.7e-16 88.6 211 38.9
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 4.3e-15 86.3 209 37.3
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 4.3e-15 86.3 209 37.3
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.8e-14 83.6 126 50.0
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 6.3e-14 82.4 125 48.8
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 8.2e-14 82.0 290 35.2
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 1.2e-12 78.2 210 36.7
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 1.6e-09 67.8 304 28.9
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 2.7e-09 67.0 266 29.7
PSO700G0244 Papaver somniferum HOM05D065651 ORTHO05D004262 3.0e-08 63.5 263 28.5
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.1e-08 62.8 216 32.4
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.1e-08 62.8 216 32.4
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.5e-07 61.2 65 53.8
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.3e-07 60.1 65 52.3
PSO170G2947 Papaver somniferum HOM05D065651 ORTHO05D004262 9.7e-07 58.5 259 28.6
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 8.2e-06 55.5 254 27.2


User provided reference genes

Program Settings