Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 2.1e-67 258.8 123 100.0
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 5.5e-36 154.5 79 92.4
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.1e-35 152.5 101 78.2
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.2e-29 132.5 76 84.2
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 2.9e-29 132.1 100 69.0
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 5.1e-26 121.3 60 90.0
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 1.1e-23 113.6 78 74.4
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 4.5e-22 108.2 50 96.0
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 5.9e-22 107.8 78 71.8
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 5.9e-22 107.8 66 77.3
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.5e-20 102.4 78 69.2
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 1.4e-18 96.7 78 66.7
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 6.7e-18 94.4 78 65.4
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 8.8e-18 94.0 78 64.1
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 8.8e-18 94.0 78 64.1
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 8.8e-18 94.0 78 64.1
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 8.8e-18 94.0 78 64.1
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 8.8e-18 94.0 78 64.1
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 1.5e-17 93.2 78 64.1
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 1.9e-17 92.8 78 64.1
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 1.9e-17 92.8 78 62.8
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 1.9e-17 92.8 78 62.8
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 1.9e-17 92.8 78 64.1
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 2.5e-17 92.4 78 62.8
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 2.5e-17 92.4 78 62.8
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 2.5e-17 92.4 78 62.8
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.3e-17 92.0 78 64.1
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.3e-17 92.0 78 64.1
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.3e-17 92.0 78 64.1
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.3e-17 92.0 78 64.1
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 3.3e-17 92.0 78 64.1
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 4.3e-17 91.7 78 62.8
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.3e-17 91.7 78 62.8
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.3e-17 91.7 78 62.8
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 4.3e-17 91.7 78 61.5
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 4.3e-17 91.7 78 62.8
Actinidia08227 Actinidia chinensis HOM05D004278 ORTHO05D021139 1.3e-16 90.1 50 84.0
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 6.3e-16 87.8 78 60.3
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 1.1e-15 87.0 78 60.3
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 2.4e-15 85.9 77 63.6
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 5.3e-15 84.7 78 59.0
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 2.0e-14 82.8 79 57.0
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 5.0e-13 78.2 35 94.3
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 2.2e-08 62.8 61 57.4
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 2.8e-08 62.4 61 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 4.8e-08 61.6 64 53.1
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 1.1e-07 60.5 61 55.7


User provided reference genes

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