Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0485871 Helianthus annuus HOM05D004313 ORTHO05D005036 6.0e-33 143.7 76 100.0
HanXRQChr04g0111761 Helianthus annuus HOM05D004313 ORTHO05D005036 4.1e-26 120.9 92 75.0
HanXRQChr12g0381491 Helianthus annuus HOM05D004313 ORTHO05D005036 4.1e-26 120.9 92 75.0
Lsat_1_v5_gn_4_106321 Lactuca sativa HOM05D004313 ORTHO05D005036 2.5e-15 85.1 50 88.0
ECA232G1058 Erigeron canadensis HOM05D004313 ORTHO05D005036 5.6e-15 84.0 50 86.0
ClCG06G016580 Citrullus lanatus HOM05D004313 ORTHO05D005036 9.5e-15 83.2 55 78.2
HanXRQChr09g0271451 Helianthus annuus HOM05D004313 ORTHO05D005036 9.5e-15 83.2 50 86.0
Lj4g0005973 Lotus japonicus HOM05D004313 ORTHO05D005036 1.2e-14 82.8 50 86.0
Lalb_Chr07g0182441 Lupinus albus HOM05D004313 ORTHO05D005036 1.2e-14 82.8 50 86.0
Phvul.003G195400 Phaseolus vulgaris HOM05D004313 ORTHO05D005036 1.2e-14 82.8 50 86.0
VMungo1215G1877 Vigna mungo HOM05D004313 ORTHO05D005036 1.2e-14 82.8 50 86.0
Cc04_g16080 Coffea canephora HOM05D004313 ORTHO05D005036 2.1e-14 82.0 50 84.0
MELO3C017136.2 Cucumis melo HOM05D004313 ORTHO05D005036 2.1e-14 82.0 50 86.0
CsaV3_1G001930 Cucumis sativus L. HOM05D004313 ORTHO05D005036 2.1e-14 82.0 50 86.0
Glyma.17G094800 Glycine max HOM05D004313 ORTHO05D005036 2.8e-14 81.6 50 86.0
arahy.Tifrunner.gnm1.ann1.PL6DWX Arachis hypogaea HOM05D004313 ORTHO05D005036 4.7e-14 80.9 49 85.7
arahy.Tifrunner.gnm1.ann1.ZX441X Arachis hypogaea HOM05D004313 ORTHO05D005036 4.7e-14 80.9 49 85.7
FvH4_5g16030 Fragaria vesca HOM05D004313 ORTHO05D005036 4.7e-14 80.9 50 84.0
FAN04G0114 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.7e-14 80.9 50 84.0
FAN08G2034 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.7e-14 80.9 50 84.0
FAN13G2316 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.7e-14 80.9 50 84.0
FAN18G3297 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.7e-14 80.9 50 84.0
Glyma.05G031900 Glycine max HOM05D004313 ORTHO05D005036 4.7e-14 80.9 50 84.0
Nitab4.5_0000003g0130 Nicotiana tabacum HOM05D004313 ORTHO05D005036 4.7e-14 80.9 50 80.0
RcHm_v2.0_Chr7g0180041 Rosa chinensis HOM05D004313 ORTHO05D005036 4.7e-14 80.9 50 84.0
CiPaw.12G022100 Carya illinoinensis HOM05D004313 ORTHO05D005036 6.2e-14 80.5 50 86.0
Ca_21869_v3 Cicer arietinum L. HOM05D004313 ORTHO05D005036 6.2e-14 80.5 50 82.0
Nitab4.5_0000758g0080 Nicotiana tabacum HOM05D004313 ORTHO05D005036 6.2e-14 80.5 50 80.0
PSO591G0306 Papaver somniferum HOM05D004313 ORTHO05D005036 6.2e-14 80.5 55 76.4
PSO832G0682 Papaver somniferum HOM05D004313 ORTHO05D005036 6.2e-14 80.5 55 76.4
CANSAT80G2445 Cannabis sativa HOM05D004313 ORTHO05D005036 8.1e-14 80.1 50 86.0
Cfa019038 Carpinus fangiana HOM05D004313 ORTHO05D005036 8.1e-14 80.1 50 84.0
Potri.015G068600 Populus trichocarpa HOM05D004313 ORTHO05D005036 8.1e-14 80.1 50 84.0
Sed0007676 Sechium edule HOM05D004313 ORTHO05D005036 8.1e-14 80.1 50 84.0
DCAR_031273 Daucus carota HOM05D004313 ORTHO05D005036 1.1e-13 79.7 55 74.5
Lj9A456G24 Lonicera japonica HOM05D004313 ORTHO05D005036 1.1e-13 79.7 50 82.0
MD06G1183500 Malus domestica HOM05D004313 ORTHO05D005036 1.1e-13 79.7 50 82.0
TPR.G38443 Trifolium pratense HOM05D004313 ORTHO05D005036 1.1e-13 79.7 49 83.7
Medtr4g107290 Medicago truncatula HOM05D004313 ORTHO05D005036 1.4e-13 79.3 49 83.7
Psat4g054720 Pisum sativum HOM05D004313 ORTHO05D005036 1.4e-13 79.3 50 82.0
TAR374G1555 Trochodendron aralioides HOM05D004313 ORTHO05D005036 1.4e-13 79.3 50 82.0
Peaxi162Scf00689g00546 Petunia axillaris HOM05D004313 ORTHO05D005036 1.8e-13 79.0 50 80.0
SalBow3G4066 Salvia bowleyana HOM05D004313 ORTHO05D005036 1.8e-13 79.0 50 76.0
TWI81G0241 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 1.8e-13 79.0 50 82.0
TAR629G1960 Trochodendron aralioides HOM05D004313 ORTHO05D005036 1.8e-13 79.0 50 82.0
CSS0037121 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 2.4e-13 78.6 55 74.5
Prupe.5G182200 Prunus persica HOM05D004313 ORTHO05D005036 2.4e-13 78.6 50 80.0
Thecc.03G071100 Theobroma cacao HOM05D004313 ORTHO05D005036 2.4e-13 78.6 50 82.0
GSVIVG01007840001 Vitis vinifera HOM05D004313 ORTHO05D005036 2.4e-13 78.6 50 82.0
Atru.chr9.2370 Acer truncatum HOM05D004313 ORTHO05D005036 3.1e-13 78.2 50 80.0
Haze_07414 Corylus avellana HOM05D004313 ORTHO05D005036 3.1e-13 78.2 50 82.0
Duzib205G0385 Durio zibethinus HOM05D004313 ORTHO05D005036 3.1e-13 78.2 50 82.0
Eucgr.B00381 Eucalyptus grandis HOM05D004313 ORTHO05D005036 3.1e-13 78.2 50 82.0
MD14G1189400 Malus domestica HOM05D004313 ORTHO05D005036 3.1e-13 78.2 50 80.0
Nn4g22972 Nelumbo nucifera HOM05D004313 ORTHO05D005036 3.1e-13 78.2 50 80.0
Potri.012G073600 Populus trichocarpa HOM05D004313 ORTHO05D005036 3.1e-13 78.2 50 82.0
TWI60G1492 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 3.1e-13 78.2 50 82.0
COL.COLO4_07633 Corchorus olitorius HOM05D004313 ORTHO05D005036 4.0e-13 77.8 50 80.0
Gohir.A07G071100 Gossypium hirsutum HOM05D004313 ORTHO05D005036 5.2e-13 77.4 50 80.0
Gohir.D07G075600 Gossypium hirsutum HOM05D004313 ORTHO05D005036 5.2e-13 77.4 50 80.0
Gorai.001G079800 Gossypium raimondii HOM05D004313 ORTHO05D005036 5.2e-13 77.4 50 80.0
Manes.06G098800 Manihot esculenta HOM05D004313 ORTHO05D005036 5.2e-13 77.4 50 80.0
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 6.8e-13 77.0 50 80.0
CAN.G628.58 Capsicum annuum HOM05D004313 ORTHO05D005036 6.8e-13 77.0 50 78.0
CiPaw.11G034400 Carya illinoinensis HOM05D004313 ORTHO05D005036 6.8e-13 77.0 50 80.0
Hma1.2p1_0002F.1_g003010 Hydrangea macrophylla HOM05D004313 ORTHO05D005036 6.8e-13 77.0 50 80.0
MBI18_g11290_MAGBIO Magnolia biondii HOM05D004313 ORTHO05D005036 6.8e-13 77.0 50 76.0
vmacro19341 Vaccinium macrocarpon HOM05D004313 ORTHO05D005036 6.8e-13 77.0 50 80.0
THA.LOC104819430 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 8.9e-13 76.6 49 79.6
Cpa.g.sc391.2 Carica papaya HOM05D004313 ORTHO05D005036 1.2e-12 76.3 50 78.0
Ciclev10018728m.g Citrus clementina HOM05D004313 ORTHO05D005036 1.2e-12 76.3 50 78.0
CSS0019418 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 1.5e-12 75.9 50 78.0
CARHR276380 Cardamine hirsuta HOM05D004313 ORTHO05D005036 1.5e-12 75.9 49 77.6
Dinv07987 Davidia involucrata HOM05D004313 ORTHO05D005036 1.5e-12 75.9 50 80.0
Dinv13117 Davidia involucrata HOM05D004313 ORTHO05D005036 1.5e-12 75.9 50 78.0
Duzib084G0573 Durio zibethinus HOM05D004313 ORTHO05D005036 1.5e-12 75.9 50 78.0
MSTRG.4395 Avicennia marina HOM05D004313 ORTHO05D005036 2.0e-12 75.5 50 76.0
Sc12g0005870 Simmondsia chinensis HOM05D004313 ORTHO05D005036 2.0e-12 75.5 50 76.0
Oeu022185.1 Olea europaea HOM05D004313 ORTHO05D005036 2.6e-12 75.1 50 76.0
AL8G39490 Arabidopsis lyrata HOM05D004313 ORTHO05D005036 4.4e-12 74.3 49 75.5
BcaC01g02491 Brassica carinata HOM05D004313 ORTHO05D005036 4.4e-12 74.3 49 75.5
BcaC04g23404 Brassica carinata HOM05D004313 ORTHO05D005036 4.4e-12 74.3 49 75.5
BcaNung01388 Brassica carinata HOM05D004313 ORTHO05D005036 4.4e-12 74.3 49 75.5
A06p29280 Brassica napus HOM05D004313 ORTHO05D005036 4.4e-12 74.3 49 75.5
A09p07780 Brassica napus HOM05D004313 ORTHO05D005036 4.4e-12 74.3 49 75.5
C03p64200 Brassica napus HOM05D004313 ORTHO05D005036 4.4e-12 74.3 49 75.5
C09p08680 Brassica napus HOM05D004313 ORTHO05D005036 4.4e-12 74.3 49 75.5
BolC3t18678H Brassica oleracea HOM05D004313 ORTHO05D005036 4.4e-12 74.3 49 75.5
BolC9t53779H Brassica oleracea HOM05D004313 ORTHO05D005036 4.4e-12 74.3 49 75.5
BraA06t25884Z Brassica rapa HOM05D004313 ORTHO05D005036 4.4e-12 74.3 49 75.5
BraA09t36426Z Brassica rapa HOM05D004313 ORTHO05D005036 4.4e-12 74.3 49 75.5
Carub.0008s2330 Capsella rubella HOM05D004313 ORTHO05D005036 4.4e-12 74.3 49 75.5
Thhalv10003602m.g Eutrema salsugineum HOM05D004313 ORTHO05D005036 4.4e-12 74.3 49 75.5
Solyc06g071200.3 Solanum lycopersicum HOM05D004313 ORTHO05D005036 4.4e-12 74.3 50 74.0
Sopen06g027510 Solanum pennellii HOM05D004313 ORTHO05D005036 4.4e-12 74.3 50 74.0
unitig_21.g20456 Utricularia gibba HOM05D004313 ORTHO05D005036 4.4e-12 74.3 50 74.0
Aa31LG11G1040 Aethionema arabicum HOM05D004313 ORTHO05D005036 5.8e-12 73.9 49 75.5
CDE05G2166 Ceratophyllum demersum HOM05D004313 ORTHO05D005036 5.8e-12 73.9 55 69.1
Hund09391 Selenicereus undatus HOM05D004313 ORTHO05D005036 5.8e-12 73.9 50 76.0
Aqoxy3G03179 Aquilegia oxysepala HOM05D004313 ORTHO05D005036 7.6e-12 73.6 51 76.5
Migut.D01890 Erythranthe guttata HOM05D004313 ORTHO05D005036 7.6e-12 73.6 50 76.0
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 7.6e-12 73.6 50 76.0
THA.LOC104818250 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 7.6e-12 73.6 48 81.2
Actinidia37681 Actinidia chinensis HOM05D004313 ORTHO05D005036 9.9e-12 73.2 47 80.9
EL10Ac5g10873 Beta vulgaris HOM05D004313 ORTHO05D005036 9.9e-12 73.2 50 72.0
AUR62008311 Chenopodium quinoa HOM05D004313 ORTHO05D005036 9.9e-12 73.2 50 72.0
QL10p014006 Quercus lobata HOM05D004313 ORTHO05D005036 9.9e-12 73.2 50 76.0
AT5G62600 Arabidopsis thaliana HOM05D004313 ORTHO05D005036 1.3e-11 72.8 49 73.5
SHI08465 Sapria himalayana HOM05D004313 ORTHO05D005036 1.7e-11 72.4 50 70.0
Ah.11g045580 Amaranthus hybridus HOM05D004313 ORTHO05D005036 2.2e-11 72.0 50 70.0
Sp2g25780 Schrenkiella parvula HOM05D004313 ORTHO05D005036 2.9e-11 71.6 48 75.0
AUR62021785 Chenopodium quinoa HOM05D004313 ORTHO05D005036 3.8e-11 71.2 50 70.0
HPP92_025605 Vanilla planifolia HOM05D004313 ORTHO05D005036 3.8e-11 71.2 50 72.0
Zm00001eb045810 Zea mays HOM05D004313 ORTHO05D005036 3.8e-11 71.2 50 72.0
Os10g0477800 Oryza sativa ssp. japonica HOM05D004313 ORTHO05D005036 4.9e-11 70.9 50 72.0
unitig_744.g24392 Utricularia gibba HOM05D004313 ORTHO05D005036 4.9e-11 70.9 50 70.0
HanXRQChr09g0243671 Helianthus annuus HOM05D004313 ORTHO05D005036 1.1e-10 69.7 67 64.2
Zm00001eb221820 Zea mays HOM05D004313 ORTHO05D005036 1.1e-10 69.7 50 70.0
Rhsim08G0163500 Rhododendron simsii HOM05D004313 ORTHO05D005036 3.5e-09 64.7 71 56.3
ATR0322G074 Amborella trichopoda HOM05D004313 ORTHO05D005036 6.6e-08 60.5 54 61.1
CBR_g24406 Chara braunii HOM05D004313 ORTHO05D005036 8.7e-08 60.1 50 54.0
SMO144G0109 Selaginella moellendorffii HOM05D004313 ORTHO05D005036 1.2e-06 56.2 49 57.1


User provided reference genes

Program Settings