Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 0.0e+00 1488.8 776 100.0
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 7.9e-298 1026.9 796 72.2
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 3.3e-264 915.2 756 69.0
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.3e-239 833.6 739 66.4
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 1.7e-236 823.2 739 65.5
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 5.6e-195 685.3 861 50.4
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 2.0e-192 676.8 904 48.6
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 3.4e-184 649.4 858 49.9
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 2.2e-183 646.7 796 51.6
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.5e-181 639.4 877 47.9
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 3.0e-180 636.3 904 47.5
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 1.1e-177 627.9 881 48.5
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 1.1e-177 627.9 838 49.3
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 5.8e-176 622.1 838 49.2
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.9e-175 619.0 808 48.9
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.1e-174 617.8 886 47.1
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 5.5e-174 615.5 855 47.5
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 2.3e-172 610.1 848 47.5
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.5e-171 607.4 879 46.1
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 5.6e-171 605.5 829 49.2
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 6.5e-167 592.0 838 47.1
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 8.4e-167 591.7 876 45.9
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 1.9e-166 590.5 764 50.5
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 7.1e-166 588.6 855 46.4
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 9.3e-166 588.2 856 45.4
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 9.3e-166 588.2 835 46.5
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 7.9e-165 585.1 860 46.4
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.8e-164 583.9 863 45.7
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 7.4e-163 578.6 830 46.9
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 3.1e-161 573.2 835 45.9
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 5.9e-160 568.9 748 49.3
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.7e-159 567.4 876 43.8
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 6.5e-159 565.5 856 44.3
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 9.3e-158 561.6 874 44.6
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.2e-157 561.2 758 47.8
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 6.1e-157 558.9 780 46.5
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 1.0e-156 558.1 837 44.7
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 3.0e-156 556.6 859 45.4
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 3.9e-156 556.2 877 43.8
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.7e-156 555.4 834 44.8
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 5.7e-155 552.4 866 43.8
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 7.4e-155 552.0 857 44.3
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 9.7e-155 551.6 825 45.7
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.3e-154 551.2 846 45.3
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 1.8e-153 547.4 837 45.0
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 3.1e-153 546.6 866 45.0
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 6.5e-151 538.9 852 44.5
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 4.2e-150 536.2 864 45.0
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 5.5e-150 535.8 861 43.4
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 2.7e-149 533.5 835 44.9
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.6e-149 533.1 829 44.4
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 3.6e-149 533.1 848 44.1
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 4.6e-149 532.7 829 44.3
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.4e-148 531.2 913 41.9
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 3.0e-148 530.0 904 41.2
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 8.8e-148 528.5 856 43.3
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 5.7e-147 525.8 833 44.1
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.3e-146 524.6 765 45.8
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 2.2e-146 523.9 756 45.8
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 3.7e-146 523.1 858 43.4
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 6.3e-146 522.3 895 41.7
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 1.8e-145 520.8 757 45.4
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 3.1e-145 520.0 910 42.5
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 4.1e-145 519.6 852 42.8
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 6.9e-145 518.8 833 43.6
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 9.1e-145 518.5 852 42.8
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 3.4e-144 516.5 827 43.5
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 4.5e-144 516.2 848 43.6
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 1.3e-143 514.6 816 43.4
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 2.9e-143 513.5 848 43.5
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 6.5e-143 512.3 898 42.4
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.9e-142 510.8 830 42.2
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 4.7e-141 506.1 788 44.0
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.0e-140 505.0 828 43.4
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.4e-140 504.6 835 42.9
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 5.7e-139 499.2 845 42.5
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 7.4e-139 498.8 864 42.2
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 1.7e-138 497.7 797 43.5
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 2.8e-138 496.9 860 42.2
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 1.4e-137 494.6 840 42.9
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 4.1e-137 493.0 634 46.7
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 5.3e-137 492.7 769 43.4
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 9.1e-137 491.9 832 42.4
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 2.6e-136 490.3 825 43.3
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.5e-136 490.0 864 42.2
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 2.9e-135 486.9 778 43.8
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-134 485.0 865 41.8
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 2.5e-134 483.8 863 41.7
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 7.2e-134 482.3 836 41.7
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 2.1e-133 480.7 708 45.2
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 4.7e-133 479.6 834 42.1
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.4e-132 478.0 808 43.2
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 8.8e-132 475.3 862 41.6
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 2.2e-130 470.7 882 38.8
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.1e-129 468.4 861 41.6
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.4e-129 468.0 798 42.5
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 2.4e-129 467.2 796 42.0
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 7.0e-129 465.7 861 41.3
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 4.5e-128 463.0 770 42.7
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.2e-127 460.7 861 41.2
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 1.1e-126 458.4 823 42.3
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 2.7e-125 453.8 848 38.9
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.6e-125 453.4 823 40.3
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 4.0e-124 449.9 838 39.3
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 4.4e-123 446.4 830 40.2
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 5.7e-123 446.0 807 41.5
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 6.3e-122 442.6 836 40.1
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 6.3e-122 442.6 659 46.3
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 1.4e-121 441.4 692 45.2
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 1.6e-120 438.0 855 39.5
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.3e-119 434.9 785 40.3
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 4.7e-117 426.4 716 43.4
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 6.8e-116 422.5 661 44.0
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 1.2e-115 421.8 685 42.2
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 3.1e-113 413.7 844 39.9
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 2.0e-112 411.0 802 40.5
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 7.8e-112 409.1 710 42.1
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.3e-111 408.3 703 42.2
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.3e-111 407.5 722 42.2
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 3.3e-110 403.7 701 42.2
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 5.6e-110 402.9 755 38.8
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 4.0e-108 396.7 792 38.1
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.1e-105 388.7 810 38.0
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 1.6e-104 384.8 710 41.1
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 3.0e-103 380.6 703 39.5
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 3.9e-103 380.2 680 40.4
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 2.9e-98 364.0 665 40.9
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 8.3e-98 362.5 678 40.6
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 3.5e-96 357.1 668 40.6
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 1.7e-95 354.8 659 41.4
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 2.1e-93 347.8 660 41.2
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.3e-92 344.4 708 37.9
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 1.2e-88 332.0 707 38.0
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.1e-76 292.4 309 55.0
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.1e-76 292.4 309 55.0
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.7e-72 277.7 440 44.3
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 1.7e-71 275.0 606 37.1
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.8e-63 248.4 649 34.4
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.8e-55 221.9 495 38.2
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.9e-54 218.4 865 29.2
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.6e-53 215.3 744 30.8
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.0e-50 206.1 934 27.2
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 8.4e-50 203.0 163 69.3
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 4.6e-48 197.2 369 40.4
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 2.3e-47 194.9 316 39.2
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.4e-44 185.7 642 29.1
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 9.0e-44 183.0 706 30.0
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 4.8e-37 160.6 177 53.1
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 5.3e-36 157.1 105 76.2
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 9.1e-36 156.4 119 69.7
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.7e-34 152.1 304 41.1
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 5.9e-27 127.1 144 52.8
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 1.3e-26 125.9 157 43.3
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.7e-26 125.6 144 52.1
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 2.9e-26 124.8 402 31.1
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 6.5e-26 123.6 124 48.4
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 5.2e-23 114.0 115 59.1
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 1.1e-20 106.3 77 68.8
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 3.6e-16 91.3 116 51.7
ECA233G3458 Erigeron canadensis HOM05D000153 ORTHO05D002648 5.2e-15 87.4 61 73.8
ECA232G0388 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.2e-14 86.3 89 57.3
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 5.7e-14 84.0 52 78.8
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 4.5e-11 74.3 193 32.6
ECA234G0451 Erigeron canadensis HOM05D003640 ORTHO05D004439 8.5e-10 70.1 49 73.5
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 8.5e-10 70.1 34 97.1
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 1.1e-09 69.7 403 26.3
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 1.5e-09 69.3 74 55.4
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 2.5e-09 68.6 148 35.1
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 5.5e-09 67.4 193 28.0
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 7.2e-09 67.0 42 81.0
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 9.4e-09 66.6 80 45.0
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 1.6e-08 65.9 80 45.0
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 2.1e-08 65.5 333 27.6
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 2.7e-08 65.1 97 47.4
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 6.1e-08 63.9 170 31.8
CAN.G300.4 Capsicum annuum HOM05D000541 ORTHO05D000137 4.4e-06 57.8 40 65.0
CAN.G125.22 Capsicum annuum HOM05D001472 ORTHO05D004439 9.8e-06 56.6 85 41.2
CAN.G1307.1 Capsicum annuum HOM05D001472 ORTHO05D004439 9.8e-06 56.6 39 66.7


User provided reference genes

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