Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0485221 Helianthus annuus HOM05D003247 ORTHO05D003974 2.1e-85 318.9 158 100.0
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 4.6e-27 125.2 100 68.0
Solyc08g081250.4 Solanum lycopersicum HOM05D003247 ORTHO05D003974 2.3e-26 122.9 100 67.0
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 2.3e-26 122.9 100 67.0
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 3.9e-26 122.1 100 65.0
CAN.G774.62 Capsicum annuum HOM05D003247 ORTHO05D003974 6.6e-26 121.3 100 66.0
CSS0029032 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 8.6e-26 120.9 100 67.0
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 8.6e-26 120.9 100 65.0
PGSC0003DMG400012199 Solanum tuberosum HOM05D003247 ORTHO05D003974 1.1e-25 120.6 100 66.0
HanXRQChr03g0086881 Helianthus annuus HOM05D003247 ORTHO05D003974 1.9e-25 119.8 100 64.0
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 2.5e-25 119.4 100 66.0
BolC6t35397H Brassica oleracea HOM05D003247 ORTHO05D003974 3.3e-25 119.0 102 64.7
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 3.3e-25 119.0 102 64.7
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 4.3e-25 118.6 100 64.0
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 4.3e-25 118.6 100 65.0
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 4.3e-25 118.6 105 61.9
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 4.3e-25 118.6 100 64.0
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 4.3e-25 118.6 100 65.0
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 5.6e-25 118.2 100 65.0
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 5.6e-25 118.2 100 66.0
Oeu042332.3 Olea europaea HOM05D003247 ORTHO05D003974 7.3e-25 117.9 100 64.0
ClCG01G002580 Citrullus lanatus HOM05D003247 ORTHO05D003974 9.5e-25 117.5 100 63.0
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 9.5e-25 117.5 100 65.0
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 9.5e-25 117.5 100 65.0
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 9.5e-25 117.5 100 65.0
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 1.2e-24 117.1 100 65.0
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 1.2e-24 117.1 100 65.0
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 1.2e-24 117.1 100 65.0
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 1.6e-24 116.7 100 65.0
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.6e-24 116.7 100 65.0
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 1.6e-24 116.7 100 63.0
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 1.6e-24 116.7 100 64.0
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 1.6e-24 116.7 100 63.0
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 1.6e-24 116.7 100 65.0
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 2.1e-24 116.3 100 63.0
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 2.1e-24 116.3 100 64.0
DCAR_008371 Daucus carota HOM05D003247 ORTHO05D003974 2.8e-24 115.9 100 63.0
DCAR_008372 Daucus carota HOM05D003247 ORTHO05D003974 2.8e-24 115.9 100 63.0
Gohir.A03G018800 Gossypium hirsutum HOM05D003247 ORTHO05D003974 2.8e-24 115.9 100 65.0
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 2.8e-24 115.9 100 65.0
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.8e-24 115.9 100 63.0
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.8e-24 115.9 100 63.0
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 2.8e-24 115.9 100 62.0
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 3.6e-24 115.5 100 64.0
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 3.6e-24 115.5 100 62.0
Potri.001G101975 Populus trichocarpa HOM05D003247 ORTHO05D003974 4.7e-24 115.2 100 63.0
Potri.001G102051 Populus trichocarpa HOM05D003247 ORTHO05D003974 4.7e-24 115.2 100 63.0
Prupe.5G103100 Prunus persica HOM05D003247 ORTHO05D003974 4.7e-24 115.2 100 63.0
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 6.2e-24 114.8 100 64.0
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 6.2e-24 114.8 100 64.0
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 6.2e-24 114.8 100 64.0
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 6.2e-24 114.8 100 63.0
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 6.2e-24 114.8 100 64.0
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 6.2e-24 114.8 100 63.0
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 6.2e-24 114.8 100 64.0
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 6.2e-24 114.8 100 64.0
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 6.2e-24 114.8 100 62.0
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 8.0e-24 114.4 100 63.0
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 8.0e-24 114.4 100 62.0
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 8.0e-24 114.4 100 62.0
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 8.0e-24 114.4 100 62.0
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 8.0e-24 114.4 100 62.0
A06p21950 Brassica napus HOM05D003247 ORTHO05D003974 8.0e-24 114.4 100 62.0
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 8.0e-24 114.4 100 62.0
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 8.0e-24 114.4 100 62.0
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 8.0e-24 114.4 100 62.0
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 8.0e-24 114.4 100 62.0
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 8.0e-24 114.4 100 62.0
Gohir.D03G150100 Gossypium hirsutum HOM05D003247 ORTHO05D003974 8.0e-24 114.4 100 64.0
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 8.0e-24 114.4 100 63.0
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 1.0e-23 114.0 100 62.0
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 1.0e-23 114.0 100 62.0
Cc08_g14920 Coffea canephora HOM05D003247 ORTHO05D003974 1.0e-23 114.0 100 63.0
Lalb_Chr09g0332981 Lupinus albus HOM05D003247 ORTHO05D003974 1.0e-23 114.0 100 63.0
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 1.0e-23 114.0 100 62.0
Sp2g00910 Schrenkiella parvula HOM05D003247 ORTHO05D003974 1.0e-23 114.0 100 62.0
CiPaw.11G133300 Carya illinoinensis HOM05D003247 ORTHO05D003974 1.4e-23 113.6 100 62.0
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 1.4e-23 113.6 100 62.0
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 1.4e-23 113.6 100 64.0
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 1.4e-23 113.6 100 64.0
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 1.4e-23 113.6 100 62.0
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 1.4e-23 113.6 100 63.0
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 1.8e-23 113.2 100 62.0
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 1.8e-23 113.2 100 62.0
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 2.3e-23 112.8 100 63.0
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 2.3e-23 112.8 100 61.0
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 2.3e-23 112.8 100 62.0
Lalb_Chr05g0222791 Lupinus albus HOM05D003247 ORTHO05D003974 3.1e-23 112.5 100 62.0
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 3.1e-23 112.5 100 63.0
Cpa.g.sc214.14 Carica papaya HOM05D003247 ORTHO05D003974 4.0e-23 112.1 100 61.0
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 4.0e-23 112.1 100 62.0
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 4.0e-23 112.1 100 61.0
CsaV3_5G002680 Cucumis sativus L. HOM05D003247 ORTHO05D003974 5.2e-23 111.7 100 63.0
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 6.8e-23 111.3 100 62.0
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 6.8e-23 111.3 100 61.0
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 6.8e-23 111.3 100 62.0
Os08g0562700 Oryza sativa ssp. japonica HOM05D003247 ORTHO05D003974 6.8e-23 111.3 100 62.0
GSVIVG01019730001 Vitis vinifera HOM05D003247 ORTHO05D003974 6.8e-23 111.3 100 61.0
SalBow1G0073 Salvia bowleyana HOM05D003247 ORTHO05D003974 8.9e-23 110.9 100 63.0
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 1.2e-22 110.5 100 62.0
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 1.2e-22 110.5 100 61.0
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 1.2e-22 110.5 100 62.0
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 1.2e-22 110.5 100 61.0
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 1.2e-22 110.5 100 60.0
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 1.5e-22 110.2 100 60.0
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 2.0e-22 109.8 100 62.0
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 2.0e-22 109.8 100 62.0
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 3.4e-22 109.0 100 58.0
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 3.4e-22 109.0 100 61.0
Lalb_Chr16g0390091 Lupinus albus HOM05D003247 ORTHO05D003974 3.4e-22 109.0 100 60.0
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 4.4e-22 108.6 100 59.0
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 4.4e-22 108.6 100 61.0
Phvul.002G290908 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 5.8e-22 108.2 100 61.0
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 5.8e-22 108.2 100 60.0
Ah.12g051740 Amaranthus hybridus HOM05D003247 ORTHO05D003974 7.5e-22 107.8 100 61.0
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 7.5e-22 107.8 102 57.8
SMO119G0357 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 7.5e-22 107.8 102 57.8
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 7.5e-22 107.8 102 57.8
SMO351G0618 Selaginella moellendorffii HOM05D003247 ORTHO05D015875 7.5e-22 107.8 102 57.8
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 7.5e-22 107.8 100 58.0
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 7.5e-22 107.8 100 60.0
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 9.8e-22 107.5 100 61.0
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 9.8e-22 107.5 100 61.0
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 1.3e-21 107.1 100 59.0
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.7e-21 106.7 100 59.0
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 1.7e-21 106.7 100 60.0
Sc01g0005530 Simmondsia chinensis HOM05D003247 ORTHO05D003974 2.2e-21 106.3 100 61.0
Sc01g0009690 Simmondsia chinensis HOM05D003247 ORTHO05D003974 2.2e-21 106.3 100 61.0
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 2.9e-21 105.9 100 58.0
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 2.9e-21 105.9 102 57.8
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 4.9e-21 105.1 100 60.0
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 4.9e-21 105.1 100 59.0
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 4.9e-21 105.1 100 57.0
Lalb_Chr05g0224661 Lupinus albus HOM05D003247 ORTHO05D003974 6.4e-21 104.8 100 59.0
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 2.4e-20 102.8 100 58.0
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 3.2e-20 102.4 100 58.0
Pp3c9_1240 Physcomitrium patens HOM05D003247 ORTHO05D003974 4.1e-20 102.1 100 56.0
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 9.2e-20 100.9 100 58.0
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 1.2e-19 100.5 100 56.0
Pp3c15_1150 Physcomitrium patens HOM05D003247 ORTHO05D003974 2.0e-19 99.8 100 56.0
SHI07163 Sapria himalayana HOM05D003247 ORTHO05D003974 6.0e-19 98.2 100 54.0
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 1.3e-18 97.1 100 56.0
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 1.3e-18 97.1 100 55.0
Mapoly0042s0035 Marchantia polymorpha HOM05D003247 ORTHO05D003974 1.3e-18 97.1 100 57.0
Gohir.D08G202250 Gossypium hirsutum HOM05D003247 ORTHO05D003974 2.8e-16 89.4 56 75.0
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 1.1e-15 87.4 56 73.2
SMO169G0195 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 3.1e-15 85.9 100 50.0
CBR_g951 Chara braunii HOM05D003247 ORTHO05D003974 4.0e-15 85.5 100 51.0
MBI17_g33329_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 6.4e-13 78.2 83 56.6
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 1.9e-12 76.6 100 47.0
PRCOL_00005594 Prasinoderma coloniale HOM05D003247 ORTHO05D003974 6.0e-11 71.6 100 43.0
Cre17.g736650 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 7.8e-11 71.2 100 43.0
MCO13G113 Micromonas commoda HOM05D003247 ORTHO05D003974 7.8e-11 71.2 102 41.2
MCO16G652 Micromonas commoda HOM05D003247 ORTHO05D003974 1.7e-10 70.1 100 44.0
TPR.G10990 Trifolium pratense HOM05D003247 ORTHO05D003974 3.1e-07 59.3 73 46.6
MBI17_g33793_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 1.2e-06 57.4 146 30.8
CDE08G0568 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 2.0e-06 56.6 54 55.6


User provided reference genes

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