Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 3.3e-90 335.1 181 100.0
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 4.4e-50 201.8 191 61.8
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 1.1e-45 187.2 189 63.5
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 7.0e-40 167.9 206 55.3
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 2.3e-35 152.9 187 54.5
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 3.0e-30 136.0 196 46.9
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 2.0e-26 123.2 210 43.8
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 3.5e-23 112.5 197 42.1
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 3.0e-22 109.4 221 40.3
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.1e-21 107.5 180 41.1
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 7.3e-21 104.8 180 42.8
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 4.7e-20 102.1 205 40.5
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 6.2e-20 101.7 183 43.7
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 6.2e-20 101.7 180 38.9
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 1.1e-19 100.9 219 40.2
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 3.1e-19 99.4 217 37.8
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 8.9e-19 97.8 191 39.3
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.2e-18 97.4 148 43.2
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 1.5e-18 97.1 201 37.3
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.5e-18 97.1 220 36.8
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 7.5e-18 94.7 193 37.3
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.7e-17 93.6 193 38.9
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.2e-17 93.2 158 41.8
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.2e-17 93.2 196 38.3
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 2.9e-17 92.8 190 37.9
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 2.9e-17 92.8 198 39.4
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 2.9e-17 92.8 192 40.1
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.7e-17 92.4 203 38.4
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 4.9e-17 92.0 205 39.5
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 6.4e-17 91.7 205 38.0
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 6.4e-17 91.7 173 41.0
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 8.3e-17 91.3 159 41.5
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 8.3e-17 91.3 159 41.5
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 1.1e-16 90.9 183 39.3
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.4e-16 90.5 188 39.4
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.4e-16 89.7 174 37.9
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 2.4e-16 89.7 188 38.8
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.2e-16 89.4 185 41.1
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 4.1e-16 89.0 222 36.9
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 7.1e-16 88.2 179 36.9
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 9.2e-16 87.8 196 39.3
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.2e-15 87.4 174 37.4
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.6e-15 87.0 174 37.4
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 2.7e-15 86.3 180 37.8
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 2.7e-15 86.3 221 37.1
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 2.7e-15 86.3 221 37.1
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 4.6e-15 85.5 173 40.5
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 1.0e-14 84.3 200 39.0
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 1.0e-14 84.3 176 35.8
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.7e-14 83.6 164 41.5
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 2.3e-14 83.2 162 41.4
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 3.0e-14 82.8 181 38.1
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 3.9e-14 82.4 193 38.3
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.9e-14 82.4 191 38.2
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 3.9e-14 82.4 165 39.4
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 3.9e-14 82.4 196 34.7
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 3.9e-14 82.4 190 36.8
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 8.6e-14 81.3 178 37.6
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 8.6e-14 81.3 150 42.0
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 1.1e-13 80.9 170 37.6
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.1e-13 80.9 186 39.8
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 1.5e-13 80.5 198 36.9
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 1.5e-13 80.5 206 36.9
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 1.9e-13 80.1 190 37.4
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.9e-13 80.1 149 41.6
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 1.9e-13 80.1 188 35.1
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 2.5e-13 79.7 165 38.2
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 2.5e-13 79.7 221 35.7
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 3.3e-13 79.3 162 38.3
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 3.3e-13 79.3 162 38.3
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 3.3e-13 79.3 196 35.2
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 4.3e-13 79.0 207 37.2
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 4.3e-13 79.0 191 34.6
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 5.6e-13 78.6 193 33.2
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 7.3e-13 78.2 149 38.9
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 9.6e-13 77.8 153 39.2
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 9.6e-13 77.8 199 37.2
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 9.6e-13 77.8 153 39.2
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 9.6e-13 77.8 196 32.7
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.2e-12 77.4 182 36.3
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 1.2e-12 77.4 178 37.1
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.2e-12 77.4 200 37.0
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 1.2e-12 77.4 194 36.1
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 1.6e-12 77.0 203 34.5
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 2.1e-12 76.6 184 37.5
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 2.8e-12 76.3 185 36.8
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 3.6e-12 75.9 81 55.6
HanXRQChr06g0165371 Helianthus annuus HOM05D061686 ORTHO05D005414 1.1e-11 74.3 59 67.8
HanXRQChr11g0323651 Helianthus annuus HOM05D061686 ORTHO05D005414 1.1e-11 74.3 59 67.8
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.1e-11 74.3 189 34.9
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 1.4e-11 73.9 76 51.3
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 1.4e-11 73.9 186 36.6
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 1.8e-11 73.6 72 58.3
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 1.8e-11 73.6 185 35.7
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 1.8e-11 73.6 162 38.9
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 2.4e-11 73.2 185 36.8
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 2.4e-11 73.2 192 31.8
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 4.0e-11 72.4 206 30.1
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 4.0e-11 72.4 186 33.3
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 4.0e-11 72.4 184 37.0
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 4.0e-11 72.4 177 35.6
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 6.8e-11 71.6 203 30.5
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.2e-10 70.9 83 48.2
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.5e-10 70.5 203 35.0
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.5e-10 70.5 139 37.4
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 1.5e-10 70.5 81 50.6
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 1.5e-10 70.5 182 35.2
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 2.0e-10 70.1 191 31.4
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 2.0e-10 70.1 206 33.5
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 2.0e-10 70.1 195 31.8
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 2.6e-10 69.7 188 31.9
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 7.6e-10 68.2 77 49.4
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 7.6e-10 68.2 82 43.9
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.3e-09 67.4 72 48.6
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 1.7e-09 67.0 80 50.0
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 2.2e-09 66.6 84 47.6
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 3.8e-09 65.9 155 34.2
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 4.9e-09 65.5 206 34.0
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 6.4e-09 65.1 75 52.0
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 6.4e-09 65.1 83 43.4
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 8.4e-09 64.7 210 33.8
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 8.4e-09 64.7 88 43.2
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 8.4e-09 64.7 68 54.4
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.1e-08 64.3 211 31.3
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 1.1e-08 64.3 85 47.1
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 1.4e-08 63.9 199 31.7
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 1.9e-08 63.5 178 33.7
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.9e-08 63.5 217 32.7
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 3.2e-08 62.8 86 47.7
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 3.2e-08 62.8 170 35.3
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 3.2e-08 62.8 92 45.7
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 3.2e-08 62.8 190 32.1
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 3.2e-08 62.8 169 33.1
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 4.2e-08 62.4 191 34.0
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 5.4e-08 62.0 200 33.0
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 7.1e-08 61.6 87 48.3
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 9.3e-08 61.2 198 32.8
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 9.3e-08 61.2 193 30.6
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 1.2e-07 60.8 63 55.6
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 1.2e-07 60.8 150 36.0
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.2e-07 60.8 71 49.3
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 1.6e-07 60.5 190 34.2
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.6e-07 60.5 59 52.5
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 2.1e-07 60.1 204 32.8
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.7e-07 59.7 198 30.8
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 3.5e-07 59.3 86 41.9
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 1.0e-06 57.8 203 32.0
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 2.3e-06 56.6 152 34.2


User provided reference genes

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