Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 5.4e-148 527.7 278 100.0
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-85 320.5 227 74.0
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 3.0e-82 309.3 237 67.9
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 7.9e-59 231.5 235 52.3
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 1.9e-52 210.3 229 49.3
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 2.8e-48 196.4 235 48.1
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 1.8e-47 193.7 230 48.7
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 2.0e-46 190.3 233 45.9
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-45 187.6 232 45.7
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.2e-44 182.6 243 44.0
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 5.5e-44 182.2 233 47.2
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.2e-43 181.0 238 44.1
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 4.7e-43 179.1 204 50.0
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 1.7e-40 170.6 230 43.9
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.7e-40 169.5 235 43.0
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 4.8e-40 169.1 235 42.6
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 1.1e-39 167.9 232 40.1
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 1.4e-39 167.5 242 40.5
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 2.4e-39 166.8 235 39.1
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 5.3e-39 165.6 117 71.8
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 9.1e-39 164.9 235 39.1
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 9.1e-39 164.9 235 39.1
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 5.9e-38 162.2 229 41.5
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 8.5e-37 158.3 229 41.9
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 1.1e-36 157.9 237 42.6
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.9e-36 157.1 233 39.9
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 1.9e-36 157.1 238 37.4
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 5.5e-36 155.6 235 36.2
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 7.2e-36 155.2 192 44.3
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 1.6e-35 154.1 235 39.1
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 2.1e-35 153.7 240 40.4
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 2.7e-35 153.3 228 39.0
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 3.6e-35 152.9 235 38.3
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 3.6e-35 152.9 187 43.3
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 6.1e-35 152.1 229 40.2
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 1.0e-34 151.4 204 41.2
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 1.0e-34 151.4 229 40.6
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 2.3e-34 150.2 229 39.7
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 3.0e-34 149.8 233 39.5
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 5.2e-34 149.1 236 39.0
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 8.8e-34 148.3 230 38.3
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 1.5e-33 147.5 192 42.2
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 2.0e-33 147.1 235 37.9
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 1.7e-32 144.1 194 41.8
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 3.7e-32 142.9 205 42.0
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 4.8e-32 142.5 239 37.2
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 6.3e-32 142.1 230 36.1
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 8.3e-32 141.7 230 34.8
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 8.3e-32 141.7 230 34.3
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 1.8e-31 140.6 236 35.2
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 4.1e-31 139.4 239 36.0
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 5.4e-31 139.0 225 39.1
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 1.2e-30 137.9 261 35.2
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.6e-30 137.5 231 35.5
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 1.6e-30 137.5 200 41.5
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 2.7e-30 136.7 261 35.2
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 2.7e-30 136.7 234 38.0
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 5.9e-30 135.6 230 33.0
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 7.7e-30 135.2 149 50.3
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 7.7e-30 135.2 230 34.8
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 7.7e-30 135.2 232 38.4
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.0e-29 134.8 235 35.7
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 1.0e-29 134.8 237 32.5
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.3e-29 134.4 231 34.6
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.3e-29 134.4 248 34.3
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 1.7e-29 134.0 234 35.9
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 3.8e-29 132.9 195 39.5
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 3.8e-29 132.9 225 36.0
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 5.0e-29 132.5 192 42.7
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 6.6e-29 132.1 138 55.8
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 6.6e-29 132.1 202 39.6
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 1.1e-28 131.3 232 35.3
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 1.5e-28 131.0 231 34.2
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 5.5e-28 129.0 241 34.9
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 7.2e-28 128.6 225 35.6
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 1.2e-27 127.9 256 31.6
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 2.1e-27 127.1 186 38.2
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 2.1e-27 127.1 216 38.4
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.6e-27 126.3 216 38.4
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 6.1e-27 125.6 204 39.7
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.4e-26 124.4 238 33.6
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 5.2e-26 122.5 236 33.5
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 2.0e-25 120.6 194 36.6
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 3.4e-25 119.8 230 34.3
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 7.5e-25 118.6 186 40.9
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.3e-24 117.9 275 30.2
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 1.3e-24 117.9 231 33.3
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 1.3e-24 117.9 242 34.3
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 2.2e-24 117.1 240 32.1
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 3.7e-24 116.3 240 32.1
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 4.9e-24 115.9 236 32.6
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 6.3e-24 115.5 236 32.2
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 6.3e-24 115.5 231 32.9
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 6.3e-24 115.5 236 32.2
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 6.3e-24 115.5 231 32.9
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 6.3e-24 115.5 222 32.0
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 8.3e-24 115.2 236 32.2
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 2.4e-23 113.6 235 30.6
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 3.2e-23 113.2 236 32.2
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 4.1e-23 112.8 240 33.8
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 4.5e-22 109.4 205 35.6
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 5.9e-22 109.0 251 31.5
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 3.9e-21 106.3 237 32.5
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 8.6e-21 105.1 235 30.2
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.1e-20 104.8 236 30.9
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 2.8e-19 100.1 190 36.8
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 6.8e-18 95.5 179 33.5
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 8.9e-18 95.1 227 33.5
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 2.0e-17 94.0 308 26.6
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 2.6e-17 93.6 115 41.7
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 3.4e-17 93.2 131 38.9
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 2.4e-15 87.0 236 28.8
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 7.8e-14 82.0 206 32.0
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-13 81.3 68 58.8
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.3e-13 80.5 138 39.1
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 2.3e-13 80.5 184 34.2
HanXRQChr15g0485031 Helianthus annuus HOM05D005414 ORTHO05D226280 3.0e-13 80.1 137 43.1
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 1.1e-12 78.2 109 43.1
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 1.1e-12 78.2 109 43.1
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 1.9e-12 77.4 153 30.7
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 1.6e-11 74.3 147 34.0
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 1.6e-11 74.3 99 40.4
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 2.1e-11 73.9 113 35.4
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.7e-11 72.8 66 53.0
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 3.1e-10 70.1 150 30.0
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 5.2e-10 69.3 114 34.2
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 8.3e-08 62.0 138 39.1
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 1.1e-07 61.6 116 35.3
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 2.4e-07 60.5 126 37.3
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 7.1e-07 58.9 199 26.1
Lsat_1_v5_gn_1_83900 Lactuca sativa HOM05D005414 ORTHO05D229358 9.2e-07 58.5 61 49.2
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 9.2e-07 58.5 99 32.3
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 2.7e-06 57.0 125 31.2
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 6.0e-06 55.8 115 32.2


User provided reference genes

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