Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 2.8e-135 485.3 252 100.0
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-83 313.9 237 67.9
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 5.7e-80 301.6 238 64.7
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 4.2e-59 232.3 249 51.0
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 4.2e-51 205.7 253 47.4
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 9.7e-48 194.5 248 49.2
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 2.2e-47 193.4 247 45.3
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 2.7e-45 186.4 254 44.5
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 3.5e-45 186.0 256 43.0
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 4.5e-45 185.7 241 45.6
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 8.5e-44 181.4 249 44.2
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 4.2e-43 179.1 247 41.7
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 5.5e-43 178.7 242 41.7
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 7.2e-43 178.3 116 78.4
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 1.2e-40 171.0 237 42.2
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 2.0e-40 170.2 202 49.0
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 6.3e-39 165.2 239 41.0
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 9.1e-38 161.4 235 41.3
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 1.6e-37 160.6 236 39.8
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 2.0e-37 160.2 230 44.3
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 3.5e-37 159.5 229 44.1
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 7.7e-37 158.3 233 38.6
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 1.0e-36 157.9 192 46.9
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.3e-36 157.5 230 40.4
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.7e-36 157.1 232 38.8
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 1.7e-36 157.1 232 38.8
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.8e-36 156.0 230 40.4
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 6.6e-36 155.2 229 42.8
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 6.6e-36 155.2 228 40.4
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.5e-35 154.1 233 39.9
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.9e-35 153.7 224 42.4
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 5.5e-35 152.1 224 42.0
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 7.2e-35 151.8 241 39.4
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 9.5e-35 151.4 192 43.2
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 1.6e-34 150.6 232 37.5
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.6e-34 150.6 224 40.6
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.6e-34 150.6 224 41.1
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 1.6e-34 150.6 225 41.8
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.8e-34 149.8 187 42.8
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 3.6e-34 149.4 224 41.1
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 6.1e-34 148.7 232 37.5
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 1.0e-33 147.9 234 38.9
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 1.4e-33 147.5 227 38.3
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 2.3e-33 146.7 232 37.1
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 4.0e-33 146.0 236 36.9
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 8.9e-33 144.8 233 39.5
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 8.9e-33 144.8 234 38.5
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 8.9e-33 144.8 241 38.2
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 1.2e-32 144.4 197 42.6
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 1.2e-32 144.4 234 37.6
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.0e-32 143.7 233 39.5
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.0e-32 143.7 224 41.1
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 3.4e-32 142.9 247 37.2
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 3.4e-32 142.9 200 42.5
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 5.7e-32 142.1 238 37.8
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 5.7e-32 142.1 232 36.6
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 5.7e-32 142.1 238 39.1
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 7.5e-32 141.7 236 37.7
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 7.5e-32 141.7 232 36.6
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 1.3e-31 141.0 236 38.1
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 2.2e-31 140.2 232 36.2
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 4.9e-31 139.0 229 36.2
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 1.1e-30 137.9 241 37.8
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 1.1e-30 137.9 234 37.2
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 1.8e-30 137.1 202 40.1
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 1.6e-29 134.0 260 35.8
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 7.8e-29 131.7 150 47.3
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 1.0e-28 131.3 205 37.6
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 1.3e-28 131.0 238 36.1
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 1.3e-28 131.0 231 37.2
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 2.9e-28 129.8 238 35.3
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 2.9e-28 129.8 201 39.3
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 6.6e-28 128.6 240 36.7
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 1.1e-27 127.9 240 36.2
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 1.1e-27 127.9 240 36.2
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 1.1e-27 127.9 238 35.7
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 1.5e-27 127.5 240 36.2
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 1.5e-27 127.5 240 36.2
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 1.5e-27 127.5 254 33.1
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 2.5e-27 126.7 225 38.2
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 3.3e-27 126.3 240 35.8
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 3.3e-27 126.3 236 36.4
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 7.3e-27 125.2 238 35.3
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 7.3e-27 125.2 240 35.4
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 9.5e-27 124.8 243 34.6
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.2e-26 124.4 225 37.8
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.6e-26 124.0 198 42.4
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 3.6e-26 122.9 193 38.9
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 3.6e-26 122.9 216 40.7
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 3.1e-25 119.8 225 37.8
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.2e-24 117.9 197 36.5
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 3.4e-24 116.3 201 37.8
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 5.8e-24 115.5 254 33.9
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.3e-23 114.4 237 35.9
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 3.7e-23 112.8 224 34.4
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 3.7e-23 112.8 201 37.3
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 3.7e-23 112.8 241 32.4
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 6.4e-23 112.1 245 29.4
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.9e-22 110.5 228 32.9
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 4.1e-22 109.4 240 32.9
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 9.2e-22 108.2 185 36.8
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 3.9e-20 102.8 183 35.5
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.9e-19 100.5 183 36.6
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.2e-18 97.8 231 32.0
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 8.0e-18 95.1 258 29.8
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 1.4e-17 94.4 106 44.3
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 3.1e-17 93.2 242 31.4
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 5.2e-17 92.4 117 42.7
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.5e-16 90.9 235 31.9
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 9.8e-16 88.2 80 55.0
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 1.3e-15 87.8 289 26.3
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 5.4e-14 82.4 152 34.9
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 2.1e-13 80.5 150 36.7
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 2.7e-13 80.1 264 31.4
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 3.5e-13 79.7 105 42.9
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 4.6e-13 79.3 155 34.2
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 4.6e-13 79.3 144 36.8
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.0e-12 78.2 138 38.4
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.3e-12 77.8 107 37.4
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 1.3e-12 77.8 229 27.9
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 5.1e-12 75.9 84 45.2
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 8.6e-12 75.1 107 36.4
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 8.6e-12 75.1 179 33.0
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 1.2e-10 71.2 115 34.8
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 4.7e-10 69.3 157 28.7
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 1.8e-09 67.4 127 33.9
HanXRQChr15g0485031 Helianthus annuus HOM05D005414 ORTHO05D226280 5.2e-09 65.9 88 46.6
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 2.0e-08 63.9 94 42.6
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 2.6e-08 63.5 111 36.0
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 7.6e-08 62.0 110 30.9
Lsat_1_v5_gn_1_83900 Lactuca sativa HOM05D005414 ORTHO05D229358 6.4e-07 58.9 62 53.2
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.1e-06 58.2 79 43.0


User provided reference genes

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