Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 2.2e-205 718.8 376 100.0
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 9.9e-121 437.6 337 68.0
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.0e-117 427.6 375 61.6
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 2.9e-112 409.5 354 61.6
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 5.1e-101 372.1 382 52.6
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 4.0e-98 362.5 386 52.6
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 2.0e-97 360.1 389 51.7
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 2.6e-97 359.8 370 54.1
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 5.8e-97 358.6 387 51.2
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 1.3e-96 357.5 330 57.9
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.7e-96 357.1 377 53.6
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 3.8e-96 355.9 373 51.2
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 3.5e-94 349.4 375 52.3
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 7.9e-94 348.2 378 52.4
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.0e-93 346.3 376 51.9
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 4.3e-92 342.4 385 50.9
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 4.3e-92 342.4 376 51.3
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 5.6e-92 342.0 373 53.6
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 8.1e-91 338.2 378 51.9
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.1e-90 337.8 369 50.4
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 4.0e-90 335.9 379 49.6
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 9.0e-90 334.7 379 51.5
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 9.0e-90 334.7 372 51.6
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 1.2e-89 334.3 372 53.8
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.2e-89 334.3 372 50.3
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.5e-89 334.0 379 52.0
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 2.0e-89 333.6 379 50.1
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 3.4e-89 332.8 374 51.6
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 4.5e-89 332.4 383 49.3
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 7.6e-89 331.6 373 49.3
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.0e-88 331.3 340 53.2
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 1.3e-88 330.9 374 50.8
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.7e-88 330.5 373 49.6
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 2.9e-88 329.7 374 51.6
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 2.9e-88 329.7 374 51.6
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 4.9e-88 328.9 387 49.6
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 6.5e-88 328.6 383 49.3
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.1e-87 327.8 373 49.3
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.5e-87 326.6 378 49.2
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 4.2e-87 325.9 369 49.3
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 5.5e-87 325.5 376 50.5
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 7.1e-87 325.1 372 49.2
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.2e-86 324.3 373 50.7
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.2e-86 324.3 417 47.2
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 2.3e-85 320.1 374 48.7
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 5.1e-85 318.9 374 49.2
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 6.7e-85 318.5 373 49.3
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 8.7e-85 318.2 373 47.5
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.5e-84 317.4 385 48.3
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 4.3e-84 315.8 378 47.1
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 5.7e-84 315.5 348 51.7
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 7.4e-84 315.1 372 48.7
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.1e-83 313.5 379 47.2
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 3.7e-83 312.8 358 49.2
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 8.2e-83 311.6 380 47.9
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 8.2e-83 311.6 370 46.8
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.1e-82 311.2 379 46.7
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 2.4e-82 310.1 369 49.3
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 3.1e-82 309.7 377 48.0
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 5.3e-82 308.9 377 48.0
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.9e-82 308.5 379 46.4
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 9.0e-82 308.1 374 48.9
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 3.4e-81 306.2 373 47.5
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 4.5e-81 305.8 365 47.4
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 4.5e-81 305.8 368 47.0
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 5.9e-81 305.4 365 47.4
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 5.9e-81 305.4 369 48.8
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 1.3e-80 304.3 375 48.5
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.9e-80 303.1 371 46.9
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 7.2e-79 298.5 370 49.5
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.2e-78 297.7 329 51.7
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 1.0e-77 294.7 370 46.2
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.3e-77 294.3 370 46.8
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 1.3e-77 294.3 364 49.2
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.8e-77 293.9 383 45.7
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.8e-77 293.9 313 50.5
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 3.0e-77 293.1 325 50.8
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.1e-77 292.4 371 46.1
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 5.1e-77 292.4 364 45.6
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 1.5e-76 290.8 380 46.6
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.5e-76 290.8 371 46.1
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 5.7e-76 288.9 368 47.3
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 9.7e-76 288.1 368 43.5
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.6e-75 287.3 309 50.5
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 2.8e-75 286.6 364 43.4
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 8.2e-75 285.0 368 43.5
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 8.2e-75 285.0 369 47.2
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.8e-74 283.9 373 42.9
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 4.1e-74 282.7 372 47.0
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 5.3e-74 282.3 364 42.0
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 6.9e-74 282.0 372 42.5
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.2e-73 281.2 364 46.2
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 2.0e-73 280.4 373 45.3
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 2.6e-73 280.0 365 44.1
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 4.5e-73 279.3 373 42.6
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 4.5e-73 279.3 372 42.5
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 4.5e-73 279.3 372 42.5
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 4.5e-73 279.3 373 42.6
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 1.3e-72 277.7 367 41.7
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.3e-72 277.7 364 42.6
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 3.8e-72 276.2 365 41.9
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 1.4e-71 274.2 364 42.3
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.4e-71 274.2 393 43.0
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 2.5e-71 273.5 364 42.0
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 9.4e-71 271.6 365 42.5
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 9.4e-71 271.6 365 42.5
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 3.6e-70 269.6 367 42.5
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 7.9e-70 268.5 364 41.8
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.8e-69 267.3 365 42.5
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 2.3e-69 266.9 350 42.3
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.3e-69 266.9 366 43.7
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.1e-68 264.6 369 40.4
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 2.5e-68 263.5 375 41.1
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 7.4e-68 261.9 378 40.5
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 1.3e-67 261.2 369 40.4
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 1.3e-67 261.2 369 40.4
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 2.8e-67 260.0 381 40.7
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 1.4e-66 257.7 335 46.9
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 3.1e-66 256.5 333 44.4
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.5e-65 254.2 347 42.7
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 7.7e-65 251.9 357 43.1
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.9e-63 247.3 348 42.2
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 3.7e-59 233.0 334 41.9
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 6.3e-59 232.3 332 44.0
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 5.9e-57 225.7 282 45.7
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.0e-53 214.9 375 37.6
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 4.4e-52 209.5 288 42.7
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 7.0e-50 202.2 330 39.4
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.6e-49 201.1 279 41.6
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 8.8e-45 185.3 201 46.8
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 7.5e-36 155.6 384 34.1
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 4.1e-34 149.8 132 64.4
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 3.6e-30 136.7 388 32.2
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 2.3e-29 134.0 134 54.5
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.4e-26 124.8 161 44.7
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 2.4e-26 124.0 257 34.6
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.7e-24 117.9 265 34.0
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 1.1e-23 115.2 387 28.4
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 7.3e-23 112.5 371 26.1
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.2e-22 109.4 125 42.4
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 1.4e-21 108.2 243 30.5
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 8.9e-21 105.5 104 50.0
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.0e-20 104.4 373 23.3
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.6e-20 104.0 142 38.0
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 9.8e-20 102.1 119 41.2
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.2e-17 95.1 134 38.8
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.7e-17 94.0 129 38.8
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 8.1e-14 82.4 82 43.9
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.3e-11 75.1 89 43.8
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.3e-11 75.1 89 43.8
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.2e-09 68.6 105 41.0
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 3.9e-08 63.5 68 48.5
HanXRQChr14g0436661 Helianthus annuus HOM05D002428 ORTHO05D005085 6.6e-08 62.8 49 69.4
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 6.6e-08 62.8 102 39.2
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 3.3e-07 60.5 67 46.3
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 9.5e-07 58.9 68 45.6
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 1.6e-06 58.2 68 44.1
Cre17.g708350 Chlamydomonas reinhardtii HOM05D002428 ORTHO05D005085 2.1e-06 57.8 365 22.2
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 3.6e-06 57.0 57 49.1
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 8.1e-06 55.8 57 45.6


User provided reference genes

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