Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 8.6e-210 733.4 371 100.0
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 1.7e-69 267.3 375 47.7
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 2.2e-56 223.8 195 62.6
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 7.1e-47 192.2 375 38.4
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 6.9e-42 175.6 390 36.7
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 3.4e-41 173.3 375 36.5
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 3.4e-41 173.3 348 39.1
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 7.6e-41 172.2 382 37.4
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 4.9e-40 169.5 355 36.9
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 2.1e-38 164.1 389 36.8
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 3.0e-37 160.2 376 33.8
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 3.3e-36 156.8 207 47.8
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 4.8e-35 152.9 173 50.9
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.1e-34 151.8 383 34.7
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.4e-34 151.4 376 37.2
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.8e-34 151.0 207 45.9
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.8e-34 151.0 207 45.9
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 2.4e-34 150.6 382 35.1
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.4e-34 150.6 398 33.2
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 3.1e-34 150.2 381 34.1
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 5.3e-34 149.4 234 42.7
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 5.3e-34 149.4 387 33.9
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 6.9e-34 149.1 382 33.8
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 6.9e-34 149.1 375 32.0
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 1.2e-33 148.3 231 43.3
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 1.5e-33 147.9 392 33.4
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.0e-33 147.5 220 42.3
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.4e-33 146.7 207 45.4
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 4.5e-33 146.4 199 43.2
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 4.5e-33 146.4 387 34.1
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.0e-32 145.2 382 33.0
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.0e-32 145.2 382 33.0
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 2.2e-32 144.1 379 36.1
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 5.0e-32 142.9 179 45.8
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 8.5e-32 142.1 194 42.3
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.1e-31 141.7 247 39.3
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 2.5e-31 140.6 397 32.2
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 2.5e-31 140.6 384 34.1
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 3.2e-31 140.2 214 40.7
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 3.2e-31 140.2 214 40.2
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 3.2e-31 140.2 180 44.4
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 7.2e-31 139.0 180 44.4
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 9.3e-31 138.7 376 30.9
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 1.6e-30 137.9 374 33.2
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.6e-30 137.9 147 52.4
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 3.6e-30 136.7 177 47.5
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 6.1e-30 136.0 173 46.2
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.0e-29 135.2 386 31.1
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 3.0e-29 133.7 183 43.2
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 6.7e-29 132.5 357 34.2
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 1.1e-28 131.7 196 40.8
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 1.1e-28 131.7 378 31.7
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.1e-28 131.7 225 42.7
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 1.5e-28 131.3 380 33.9
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 1.5e-28 131.3 371 32.1
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.9e-28 131.0 142 50.0
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 5.7e-28 129.4 234 39.3
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 7.4e-28 129.0 369 32.2
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 9.7e-28 128.6 369 31.4
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.3e-27 128.3 369 31.2
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 1.6e-27 127.9 187 41.2
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 1.6e-27 127.9 175 41.1
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 2.2e-27 127.5 193 44.0
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 2.2e-27 127.5 390 29.7
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 2.8e-27 127.1 263 38.4
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 3.7e-27 126.7 386 31.9
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 6.3e-27 125.9 114 53.5
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.1e-26 125.2 389 29.0
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.1e-26 125.2 209 37.3
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.4e-26 124.8 193 39.4
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.4e-26 124.8 235 38.7
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 1.8e-26 124.4 140 49.3
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.4e-26 124.0 191 40.8
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 3.1e-26 123.6 190 39.5
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 5.3e-26 122.9 179 40.2
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 6.9e-26 122.5 168 45.2
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 9.1e-26 122.1 134 47.0
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 1.2e-25 121.7 181 40.3
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 2.0e-25 120.9 113 50.4
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 2.0e-25 120.9 113 50.4
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 2.0e-25 120.9 113 50.4
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 2.6e-25 120.6 140 42.1
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 3.4e-25 120.2 248 35.1
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 3.4e-25 120.2 131 47.3
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 4.5e-25 119.8 154 44.8
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 4.5e-25 119.8 154 44.8
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 4.5e-25 119.8 113 50.4
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.5e-25 119.8 363 31.4
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 7.7e-25 119.0 114 51.8
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 7.7e-25 119.0 114 51.8
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.0e-24 118.6 184 43.5
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 2.2e-24 117.5 221 37.6
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 2.2e-24 117.5 357 31.7
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 2.9e-24 117.1 172 40.7
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 3.8e-24 116.7 208 38.5
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 5.0e-24 116.3 405 30.4
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 6.5e-24 115.9 203 37.4
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 8.5e-24 115.5 134 44.8
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.1e-23 115.2 148 41.2
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 1.4e-23 114.8 199 38.2
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 1.9e-23 114.4 107 47.7
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 3.2e-23 113.6 391 27.6
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 4.2e-23 113.2 186 38.7
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 5.5e-23 112.8 206 36.4
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 5.5e-23 112.8 144 40.3
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 9.4e-23 112.1 397 29.2
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 1.2e-22 111.7 199 38.2
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 1.2e-22 111.7 107 46.7
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 2.1e-22 110.9 235 32.3
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 3.6e-22 110.2 240 31.7
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 3.6e-22 110.2 240 31.7
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 3.6e-22 110.2 400 29.2
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.3e-21 107.5 111 48.6
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 2.3e-21 107.5 155 41.9
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 3.0e-21 107.1 190 37.9
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 3.9e-21 106.7 163 37.4
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 8.8e-21 105.5 383 29.2
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.5e-20 104.8 158 36.1
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 4.4e-20 103.2 112 46.4
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 3.7e-19 100.1 238 31.1
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.1e-18 98.6 219 34.2
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 5.3e-18 96.3 218 31.7
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 7.7e-17 92.4 162 34.0
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 1.3e-16 91.7 91 50.5
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.5e-15 87.4 142 36.6
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 1.2e-14 85.1 95 44.2
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 3.6e-14 83.6 243 29.2
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 1.8e-13 81.3 112 43.8
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 5.2e-13 79.7 222 31.1
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 3.7e-11 73.6 318 29.2
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 3.7e-11 73.6 109 38.5
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 6.3e-11 72.8 121 36.4
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 8.2e-11 72.4 182 33.5
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.0e-08 65.5 140 35.0
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 2.9e-08 63.9 52 53.8
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 2.9e-08 63.9 128 32.8
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 2.5e-07 60.8 80 41.2
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 2.1e-06 57.8 190 30.0


User provided reference genes

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